View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_15 (Length: 423)
Name: NF17752_low_15
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 47502166 - 47501752
Alignment:
| Q |
8 |
catcatcacatgcaaaaagtcagtctttaaaaattaatcaatttaagtacttgttgattttgaaactttaaaataacaca----agtctataaccaccca |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
47502166 |
catcatcacatgcaaaaagtcagtctttaaaaattaatcaatttaagtacttgttgattttgaaactttaaaataacacacacaagtctataagcaccca |
47502067 |
T |
|
| Q |
104 |
tattatcnnnnnnnnnnnnnnnnnnnaaacgccaatattagtagtattttcttctttttactagggtttggatctgggtggacgaacttcataaactttt |
203 |
Q |
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| T |
47502066 |
tattatcttttctttttcatttttttaaacgccaatattagcagtattttcttctttttactagggtttggatctgggtggacgaacttcataaactttt |
47501967 |
T |
|
| Q |
204 |
aggtcaaattagttgaaatgatgtagatca-------taaa--------cttttatatataacactactcggtttgaaatacgggtcactcaatcttgat |
288 |
Q |
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||||||||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47501966 |
aggtcaaattagttgaaattatgtagatcaatattagtaaataagtgtcctgctatatataacactactcggtttgaaatacgggtcactcaatcttgat |
47501867 |
T |
|
| Q |
289 |
ccaacaacccaaatttaaataatttaattagttcccgctgagatatttatttcatagtgtacttttattgggcaataaggtctcaaattagatgacattg |
388 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47501866 |
ccaacaacccaaatttaaataattta----gttctcgctgagatatttatttcatattgtacttttattgggcaataaggtctcaaattagatgacattg |
47501771 |
T |
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| Q |
389 |
aaaaaacaagcaaatatat |
407 |
Q |
| |
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||||||||||||||||||| |
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| T |
47501770 |
aaaaaacaagcaaatatat |
47501752 |
T |
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