View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_16 (Length: 418)
Name: NF17752_low_16
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Complemental strand, 29632767 - 29632383
Alignment:
| Q |
13 |
atgaaacaaaacagaggatatgcaactgtcctcgaatgatatatataattacataaacattaaaatnnnnnnncatagcggtcaggctatctacaaacag |
112 |
Q |
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| T |
29632767 |
atgaaacaaaacagtggatatgcaactgacctcgaatgatata----attacataaacattaaaataaaaaaacatggcggtcaggctatctacaaacag |
29632672 |
T |
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| Q |
113 |
tgaatccaaacatgcattaagcaaaacacttaagaccacataaatcaataaaaaagcatctttagcacacaataaaatcaaataaaaatgaagttctaat |
212 |
Q |
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| T |
29632671 |
tgaatccaaacatgcattaagcaaaacacttaagaccacataaatcaataaaaaagcatctttagcacacaataagatcaaataaaaatgaagttctaat |
29632572 |
T |
|
| Q |
213 |
gcaagcataattaaacagtcttccaatcatacttcatcaatcttcaaatgctcaggcaccttaaatcccttcctaagcctcgaaagcatacatgtacatg |
312 |
Q |
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| T |
29632571 |
gcaagcataattaaacagtcttccaatcatacttcatcaatcttcaaatgctcaggcaccttaaatcccttcctaagcctcgaaagcatacatgtacatg |
29632472 |
T |
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| Q |
313 |
ttatcttaataacagtcacacatcttttgcagattactagtcatggttgctgaaaagaacaggttttgccggttttctggtaagcactg |
401 |
Q |
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| T |
29632471 |
ttatcttaataacagtcacacatcttttgcagattactagtcatggttgctgaaaagaacaggttttgccggttttctggtaagcactg |
29632383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 209 - 401
Target Start/End: Complemental strand, 29631360 - 29631172
Alignment:
| Q |
209 |
taatgcaagcataattaaacagtcttccaatcatacttcatcaatcttcaaatgctcaggcaccttaaatcccttcctaagcctcgaaagcatacatgta |
308 |
Q |
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| T |
29631360 |
taatgcaaacataattaaacagtgttggaatcatacttgatcaatcttcaaatgctcaagcaacttcag-cccttcacaagcctcgaaggcatacatgt- |
29631263 |
T |
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| Q |
309 |
catgttatcttaataacagtcacacatc---ttttgcagattactagtcatggttgctgaaaagaacaggttttgccggttttctggtaagcactg |
401 |
Q |
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| T |
29631262 |
-----tatctcgataacggtcatacatcatctttttcagattactagtcatggtttctgaaaagaagaggttttgccggttttctggtaagcactg |
29631172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 401
Target Start/End: Original strand, 27662707 - 27662795
Alignment:
| Q |
313 |
ttatcttaataacagtcacacatcttttgcagattactagtcatggttgctgaaaagaacaggttttgccggttttctggtaagcactg |
401 |
Q |
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| T |
27662707 |
ttatcttgataacgctcacgcaacttttgcaaattactagttgttgttgcagaaaagaataggttttgccggttttctggtaagcactg |
27662795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 16488450 - 16488410
Alignment:
| Q |
183 |
aataaaatcaaataaaaatgaagttctaatgcaagcataat |
223 |
Q |
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| T |
16488450 |
aataaaatcaaataaaaataaagtttttatgcaagcataat |
16488410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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