View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_17 (Length: 399)
Name: NF17752_low_17
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 38581115 - 38581285
Alignment:
| Q |
19 |
tctttatggttttgctgctatgaagaagagttatgagttgttgaaggggagggttagatatgcttcacttttagtttgtgggtatttgtttatttgtgct |
118 |
Q |
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| T |
38581115 |
tctttatggttttgctgctatgaagaagagttatgagttgttgaaggggagggttagatatgcttcacttttagtttgtgggtacttgtttctttgtgct |
38581214 |
T |
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| Q |
119 |
gttattagtgggatgtttagcgtgattgtggtacatggtggtgatggctatggtgtattttctaggatttt |
189 |
Q |
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| T |
38581215 |
gttattagtgggatgtttagcgtgattgtggtacatggtggtgatggctatgatgtattttctaggatttt |
38581285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 248 - 386
Target Start/End: Original strand, 38581344 - 38581482
Alignment:
| Q |
248 |
cagagtgtgttttactatgtttgcaagagttatcatcatcaagagattgataagagtgctttgcatgatcatcttggtggctaccttggagaatatgtgc |
347 |
Q |
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| T |
38581344 |
cagagtgtgttttactatgtttgcaagagttatcatcatcaagagattgataagagtgctttgcatgatcatcttggtggctaccttggagaatatgtgc |
38581443 |
T |
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| Q |
348 |
ctcttaagagcagcattcaaatggaaaatttggatatat |
386 |
Q |
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| T |
38581444 |
ctcttaagagcagcattcaaatggaaaatttggatatat |
38581482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 6883935 - 6884103
Alignment:
| Q |
19 |
tctttatggttttgctgctatgaagaagagttatgagttgttgaaggggagggttagatatgcttcacttttagtttgtgggtatttgtttatttgtgct |
118 |
Q |
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| T |
6883935 |
tctttatggttttgctgctatgaagaagagttatgagttgttgaagggaagggttagatatgctgcacttttggtttgtggctatttgcttatttgtgct |
6884034 |
T |
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| Q |
119 |
gttattagtgggatgtttagcgtgattgtggtacatggtggtgatggctatggtgtattttctaggatt |
187 |
Q |
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| T |
6884035 |
gttattagtggaatgtttagtgtggttgtggtacatggtggtgatggttatggcgtgttttctaggatt |
6884103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 248 - 382
Target Start/End: Original strand, 6884164 - 6884298
Alignment:
| Q |
248 |
cagagtgtgttttactatgtttgcaagagttatcatcatcaagagattgataagagtgctttgcatgatcatcttggtggctaccttggagaatatgtgc |
347 |
Q |
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| T |
6884164 |
cagagtgtgttttactatgtttgcaagagttatcatcatcaagggattgataagagtgctttacacgatcatcttggtggctaccttggagaatatgtgc |
6884263 |
T |
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| Q |
348 |
ctcttaagagcagcattcaaatggaaaatttggat |
382 |
Q |
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| T |
6884264 |
ctcttaagagcagtattcaaatggaaaatttggat |
6884298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 4098478 - 4098571
Alignment:
| Q |
23 |
tatggttttgctgctatgaagaagagttatgagttgttgaaggggagggttagatatgcttcacttttagtttgtgggtatttgtttatttgtg |
116 |
Q |
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| T |
4098478 |
tatggttttgcagctatgaagaagagttatgagttgttgaagggtagggttagttatgcttctgtttttgtttgtgggtatttgcttatctgtg |
4098571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 4098690 - 4098728
Alignment:
| Q |
250 |
gagtgtgttttactatgtttgcaagagttatcatcatca |
288 |
Q |
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| T |
4098690 |
gagtgagttttactatgtttgtaagagttatcatcatca |
4098728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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