View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_18 (Length: 396)
Name: NF17752_low_18
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 39444622 - 39444264
Alignment:
| Q |
18 |
attgccttctccagtttgaatttgcactatgcaaagtataatggaaatgtgtttataagtggaagacatcattgcttgttaaaatatacaacttgctaaa |
117 |
Q |
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| T |
39444622 |
attgtcttctctagtttgaatttgcactatgcaaagtataatggaaatgtg-----aagtggaagacatcatcgcttgttaaaatatacaacttgctaaa |
39444528 |
T |
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| Q |
118 |
tccattttaagagtggactaaataaaaatatccctagaattgctcatacagcaaagataagagaagattcacttgatgtagtccaaacacacagtcttcc |
217 |
Q |
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| T |
39444527 |
tccattttaagagtggactaaataaaaatattcctagaattgctcatacagcaaagataagagaagattcacttgatgtagtccaaacacacaatcttcc |
39444428 |
T |
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| Q |
218 |
atgattcacttgatgtagctt-nnnnnnncgcttttaaggtattagtattaaaagactataagcttatgcaaaagaaaacattaccaaacaaatctattt |
316 |
Q |
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| T |
39444427 |
atgattcacttgatgtagcttacaaaaaacgcttttaaggtagtagtattaaaagactataagcttatgcaaaagaaaacaataccaaacaaatctattt |
39444328 |
T |
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| Q |
317 |
ttgcggaagtttgattattcattaactctttcgagggaaagtataagatgtcttttaactgatg |
380 |
Q |
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| T |
39444327 |
tagcggaagtttgattattcgttaactctttcgagggaaagtttaagatattttttaactgatg |
39444264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 39467020 - 39466745
Alignment:
| Q |
23 |
cttctccagtttgaatttgcactatgcaaagtataatggaaatgtgtttataagtggaagacatcattgcttgttaaaatatacaacttgctaaatccat |
122 |
Q |
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| T |
39467020 |
cttctctagttttagtttgcactatacaaagtataatggaaatgtgtttatatgt--aagacatcatcgcttgttaaaatatacaacttgc--------- |
39466932 |
T |
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| Q |
123 |
tttaagagtggactaaataaaaatatccctagaattgctcatacagcaaagataagagaagattcacttgatgtagtccaaacacacagtcttccatgat |
222 |
Q |
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| T |
39466931 |
-------------taaataaaaatatccctggaattgctcatacagcaaagataagagaagattcacttgatgtagtccaaacacacaatcttccatgat |
39466845 |
T |
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| Q |
223 |
tcacttgatgtagctt-----nnnnnnncgcttttaaggtattagtattaaaagactataagcttatgcaaaagaaaacattaccaaacaaatctatttt |
317 |
Q |
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| T |
39466844 |
tcacttgatgtagcttataaaaaaaaaacgcttttaaggtagtagtattaaaagactataagcttatgcaaaagaaaacattaccaaacaaatctatttt |
39466745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 39466719 - 39466658
Alignment:
| Q |
319 |
gcggaagtttgattattcattaactctttcgagggaaagtataagatgtcttttaactgatg |
380 |
Q |
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| T |
39466719 |
gcggaagtttgattattcattaactctttcgagggaaagtataagatgtcttttaactgatg |
39466658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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