View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17752_low_2 (Length: 624)
Name: NF17752_low_2
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-166; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 42550851 - 42551151
Alignment:
| Q |
1 |
ataaaaccttctaccaaccagtactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttgggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42550851 |
ataaaaccttctaccaaccagtactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttgggg |
42550950 |
T |
|
| Q |
101 |
catccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggaggtgtgctttttcttgctggtgctgccttgaatggttttgctcaagaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42550951 |
catccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggaggtgtgctttttcttgctggtgctgccttgaatggttttgctcaagaggt |
42551050 |
T |
|
| Q |
201 |
ttggatgctcattcttggtcgcatgttacttgggtttggaataggatgtgctattcaggtaattaacattattgttatttaattcggatgtttattcata |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42551051 |
ttggatgctcattcttggtcgcatgttacttgggtttggaataggatgtgctattcaggtaattaacattattgttatttacttcggatgtttattcata |
42551150 |
T |
|
| Q |
301 |
a |
301 |
Q |
| |
|
| |
|
|
| T |
42551151 |
a |
42551151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 427 - 607
Target Start/End: Original strand, 42551279 - 42551459
Alignment:
| Q |
427 |
gcatacccaacattagtgtgtatctctttaatatttataggtttcacaatatacttaggtcacaattaatgttaatttctttttgtttctttgatagagt |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42551279 |
gcatacccaacattagtgtgtatctctttaatatttataggtttcacaatatacttaggtcacaattaatgttaatttctttttgtttctttgatagagt |
42551378 |
T |
|
| Q |
527 |
gtgccaatatacgtgtctgaagttgctccatacaattacagaggagctcttaatatgatgtttcaattggcaatcactata |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42551379 |
gtgccaatatacgtgtctgaagttgctccatacaattacagaggagctcttaatatgatgtttcaattggcaatcactata |
42551459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 53 - 262
Target Start/End: Complemental strand, 42519182 - 42518973
Alignment:
| Q |
53 |
tgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggagg |
152 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| || || ||||| |||||||| |||||| || |||||||| ||||| |||||| | ||||| || |
|
|
| T |
42519182 |
tgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccactgtaactagaatctttggaagacgtcttaccatgctctctggtgg |
42519083 |
T |
|
| Q |
153 |
tgtgctttttcttgctggtgctgccttgaatggttttgctcaagaggtttggatgctcattcttggtcgcatgttacttgggtttggaataggatgtgct |
252 |
Q |
| |
|
||| |||||||| || || |||||| ||||||| || ||| || | || |||||||| | |||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
42519082 |
tgttctttttctcgccggagctgccatgaatggattcgctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgct |
42518983 |
T |
|
| Q |
253 |
attcaggtaa |
262 |
Q |
| |
|
| ||||||| |
|
|
| T |
42518982 |
aaccaggtaa |
42518973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 22 - 262
Target Start/End: Complemental strand, 1240992 - 1240752
Alignment:
| Q |
22 |
tactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgt |
121 |
Q |
| |
|
||||||| |||||| || || || |||| |||||||| ||||||||||||||||| |||||||| || || ||||| |||||||| | |||| || | |
|
|
| T |
1240992 |
tactgcaaattcgacagtcagacactaacgttgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgcaactagaatct |
1240893 |
T |
|
| Q |
122 |
ttggaaggcgtctcaccatgatttctggaggtgtgctttttcttgctggtgctgccttgaatggttttgctcaagaggtttggatgctcattcttggtcg |
221 |
Q |
| |
|
||||||| | ||| |||||| | ||||| ||||| |||||||| ||||| ||||| ||||||| || ||| || | || |||||||| | |||| || |
|
|
| T |
1240892 |
ttggaagacatcttaccatgctctctggtggtgttctttttctcgctggagctgctatgaatggattcgctgaaaaagtgtggatgctttatgttggccg |
1240793 |
T |
|
| Q |
222 |
catgttacttgggtttggaataggatgtgctattcaggtaa |
262 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| ||||||| |
|
|
| T |
1240792 |
catgttgcttggttttggaataggatgtgctaaccaggtaa |
1240752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 527 - 607
Target Start/End: Complemental strand, 42518676 - 42518596
Alignment:
| Q |
527 |
gtgccaatatacgtgtctgaagttgctccatacaattacagaggagctcttaatatgatgtttcaattggcaatcactata |
607 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
42518676 |
gtgccaatctatatgtctgaagttgctccctacaagtatagaggagctcttaacatgatgttccaattggcaataactata |
42518596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 42551203 - 42551244
Alignment:
| Q |
352 |
agaactcatccttgttctcttttattaggtaagaaaacacaa |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42551203 |
agaactcatccttgttctcttttattaggtaagaaaacacaa |
42551244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 607
Target Start/End: Complemental strand, 1240355 - 1240274
Alignment:
| Q |
526 |
tgtgccaatatacgtgtctgaagttgctccatacaattacagaggagctcttaatatgatgtttcaattggcaatcactata |
607 |
Q |
| |
|
||||||||| || |||| || |||||||| ||||| || |||||||||||||| |||||||| |||||| |||| |||||| |
|
|
| T |
1240355 |
tgtgccaatctatctgtccgaggttgctccctacaagtatagaggagctcttaacatgatgttccaattgtcaataactata |
1240274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 18235432 - 18235185
Alignment:
| Q |
15 |
caaccagtactgcagattcgatagccaaacgttaacattgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaact |
114 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| || || ||||||||||| ||||||||||| | ||||| |||||||| || ||||| |
|
|
| T |
18235432 |
caaccagtactgcaaattcgacagccaaacgttaacattattcacatcctctttgtacgtggctgctcttatcgcatctcttggggcgtcgtggctaact |
18235333 |
T |
|
| Q |
115 |
cgatcgtttggaaggcgtctcaccatgatttctggaggtgtgctttttcttgctggtgctgccttgaatggttttgctcaagaggtttggatgctcattc |
214 |
Q |
| |
|
||| | ||||||| ||| |||||||| ||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18235332 |
cgagtgcttggaagacgtatcaccatgctttctggtggtgttctttttcttgctggtgctgccatgaatggctttgctcaagaggtttggatgctcattg |
18235233 |
T |
|
| Q |
215 |
ttggtcgcatgttacttgggtttggaataggatgtgctattcaggtaa |
262 |
Q |
| |
|
||||||| ||||||||||| || || || |||||||||| |||||||| |
|
|
| T |
18235232 |
ttggtcgtatgttacttggattcggtattggatgtgctaatcaggtaa |
18235185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 52 - 262
Target Start/End: Complemental strand, 41972595 - 41972385
Alignment:
| Q |
52 |
ttgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgtttggaaggcgtctcaccatgatttctggag |
151 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| | || ||||| |||||||| |||||| || |||||||| ||||| |||||| | ||||| | |
|
|
| T |
41972595 |
ttgtttacatcctctttgtatttggccgctcttgtggattctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatgctctctggtg |
41972496 |
T |
|
| Q |
152 |
gtgtgctttttcttgctggtgctgccttgaatggttttgctcaagaggtttggatgctcattcttggtcgcatgttacttgggtttggaataggatgtgc |
251 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||||| || ||| || | || |||||||| | |||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
41972495 |
gtgttctttttctcgctggagctgctatgaatggattcgctgaaaaagtgtggatgctttatgttggccgcatgttgcttggttttggaataggatgtgc |
41972396 |
T |
|
| Q |
252 |
tattcaggtaa |
262 |
Q |
| |
|
|| ||||||| |
|
|
| T |
41972395 |
taaccaggtaa |
41972385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 516 - 603
Target Start/End: Complemental strand, 18234841 - 18234754
Alignment:
| Q |
516 |
tttgatagagtgtgccaatatacgtgtctgaagttgctccatacaattacagaggagctcttaatatgatgtttcaattggcaatcac |
603 |
Q |
| |
|
||||| ||||||||||||| || || ||||| || ||||| || || || |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
18234841 |
tttgacagagtgtgccaatttatgtttctgaggtggctccgtataagtatagaggagctcttaacatgatgttccaattggcaatcac |
18234754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 526 - 607
Target Start/End: Complemental strand, 41971985 - 41971904
Alignment:
| Q |
526 |
tgtgccaatatacgtgtctgaagttgctccatacaattacagaggagctcttaatatgatgtttcaattggcaatcactata |
607 |
Q |
| |
|
||||||||| || ||||||| |||||||| ||||| || |||||||||||||| |||||||| |||||| |||| |||||| |
|
|
| T |
41971985 |
tgtgccaatctatctgtctgaggttgctccctacaagtatagaggagctcttaacatgatgttccaattgtcaataactata |
41971904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University