View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17752_low_20 (Length: 385)
Name: NF17752_low_20
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 42899644 - 42899912
Alignment:
| Q |
1 |
cttaaaccactctccgatagtgatatcctcaccattgctggtatgggaagttgcatgaactcttccaactccaatcatcaagaaaaccattcccaaaaac |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42899644 |
cttaaaccactctctgatagtgatatcctcaccattgctggtatgggaagttgcatgaacccttccaactccaatcatcaagaaaaccattcccaaaaac |
42899743 |
T |
|
| Q |
101 |
catgggaaggtaattagtttggtgtatatatctttc------------nnnnnnngtcttcataatttaaactttattttatcctttttgtatgtgaaat |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
42899744 |
catgggaaggtaattagtttggtgtatatatctttctttttttgcccttttttttgtcttcataatttaaaatttattttatcctttttgtacgtgaaat |
42899843 |
T |
|
| Q |
189 |
actgtcactattcttcccaaagggaagggaccattcggaatcaaatatttttcttttcatttcttatat |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42899844 |
actgtcactattcttcccaaagggaagggaccattcggaatcaaatatttttcttttcatttcttatat |
42899912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 249 - 363
Target Start/End: Original strand, 42900836 - 42900950
Alignment:
| Q |
249 |
ttcttatatatatcttgttattttacaaaacatgcatgaccataatatttctaaggtgtgtgtgatgtaatacaaatatgcaagtaagagtaattaatgt |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42900836 |
ttcttatatatatcttgttattttacaaaacatgcatgaccataatatttctaaggtgtgtgtgatgtaatacaaatatgcaagtaagagtaattaatgt |
42900935 |
T |
|
| Q |
349 |
gtacatagaaaccta |
363 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42900936 |
gtacatagaaaccta |
42900950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University