View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_22 (Length: 375)
Name: NF17752_low_22
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_22 |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 183 - 365
Target Start/End: Complemental strand, 4487176 - 4486993
Alignment:
| Q |
183 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
281 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4487176 |
tgttgtgttggaggttttgcgggtttttgtgggtctgctggctgcatttttacttgatgtgaagtgcagttttttctttgttgcgtgggggctgtcatag |
4487077 |
T |
|
| Q |
282 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg |
365 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487076 |
gtccagcaggttgttgggtgatcaataggcgtaattacaatggctgtattttgctttattttttgggtctttgctagttctgtg |
4486993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 4487368 - 4487193
Alignment:
| Q |
17 |
attgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtttctgttttgtgaat |
116 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4487368 |
attgatctagttatgtcctcttttttacactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtttctattttgtgaat |
4487269 |
T |
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| Q |
117 |
tagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487268 |
tagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg |
4487193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 185 - 365
Target Start/End: Complemental strand, 10316831 - 10316650
Alignment:
| Q |
185 |
ttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcataggt |
283 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | | ||||||||||||||||||||||| |||||||||||||| |
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| T |
10316831 |
ttgtgttggaggttttgcgggtttttgtgggtctgtaggctgtgtttttacttgatgtgcaatgcagttttttctttgttgcgtgagggctgtcataggt |
10316732 |
T |
|
| Q |
284 |
ccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg |
365 |
Q |
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|||||||||||| |||||||||||||||| |||||| ||||||||| |||| |||||||||||||||| ||||| ||||||| |
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| T |
10316731 |
ccagcaggttgtggggtgatcaataggcgtaattacggtggctgtagtttgatttattttttgggtctatgctacttctgtg |
10316650 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 183 - 365
Target Start/End: Complemental strand, 19022601 - 19022423
Alignment:
| Q |
183 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
281 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | |||||| |||||||||||||| ||||||| ||| |
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| T |
19022601 |
tgttgtgttggaggttttgcgggtttttgtcggtctgcaggctgcgtttttacttgatgtgcagtgcaattttttctttgttgtgtgggggttgt----- |
19022507 |
T |
|
| Q |
282 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtg |
365 |
Q |
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|||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
19022506 |
gtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtattttgctttattttttgggtctgtgctacttctgtg |
19022423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 183 - 351
Target Start/End: Complemental strand, 22066483 - 22066319
Alignment:
| Q |
183 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
281 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
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| T |
22066483 |
tgttgtgttggagattttgcgggtttttgtgggtctgcaggctgcgtttttacaatatgtgcagtgcagttttttctttgttgcgtgggggctgt----- |
22066389 |
T |
|
| Q |
282 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtct |
351 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
22066388 |
gtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtattttgctttattttttgggtct |
22066319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 22066590 - 22066500
Alignment:
| Q |
102 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22066590 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactagaggactgtgataggtgttgtgttgtgttg |
22066500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 19022714 - 19022623
Alignment:
| Q |
102 |
ttctgttttgtgaattagattcttgtcttatcatttttt-ctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19022714 |
ttctgttttgtgaattagattcttgtcttatcatttttttctttcgaatggaacacaaactagaggactgtgataggtgttgtgttgtgttg |
19022623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 19022958 - 19022871
Alignment:
| Q |
17 |
attgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtttc |
104 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19022958 |
attgatctagttatgtcctcttttttccactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcaggtttc |
19022871 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 22066857 - 22066770
Alignment:
| Q |
17 |
attgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtttc |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
22066857 |
attgatctagttatgtcctcttttttctactttttgctagggggtatattatttgttgagaaaacataggccgaggttatcaggtttc |
22066770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 102 - 325
Target Start/End: Original strand, 13514 - 13759
Alignment:
| Q |
102 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg--------- |
192 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||| |
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| T |
13514 |
ttctgttttgtgaaatagattcctgtcttatctttttttcttttgaatggaacacaaactagaggactgcgttaggtgttgtgttgtgttgtggctgctg |
13613 |
T |
|
| Q |
193 |
------------gaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcat |
279 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||||||||||| ||||||| | || || ||||||||| |||||||||||||||||||| |
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| T |
13614 |
cctgttgtgtttgaggtttcgcgggtttttgtgggtctgctagctgcgtttttccttgatgtgcagcgcggttttttctatgttgcgtgggggctgtcat |
13713 |
T |
|
| Q |
280 |
aggtccagcaggttgttgggtgatcaataggcgaaattacagtggc |
325 |
Q |
| |
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|||||||||||||||| | ||||||||||||| |||||| ||||| |
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|
| T |
13714 |
aggtccagcaggttgtggagtgatcaataggcataattacggtggc |
13759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 22619785 - 22619698
Alignment:
| Q |
17 |
attgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtttc |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
22619785 |
attgatctagttatgtcctcttttttccactttttgccaaggggtatattttttgttgagaaaacataagtcgaggttatcgggtttc |
22619698 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 32091979 - 32092045
Alignment:
| Q |
105 |
tgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggact |
169 |
Q |
| |
|
||||||||||||||||||| | |||| | || ||| |||||| ||||||||||||||||||||||| |
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| T |
32091979 |
tgttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactataggact |
32092045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 12287209 - 12287137
Alignment:
| Q |
102 |
ttctgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggactgtg |
172 |
Q |
| |
|
|||| ||||||||||||||||| | |||| | || ||| |||||| |||||||||||||||| ||||||||| |
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|
| T |
12287209 |
ttctcttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactacaggactgtg |
12287137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 9391978 - 9391906
Alignment:
| Q |
102 |
ttctgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggactgtg |
172 |
Q |
| |
|
|||||||||||||||||||||| | | || | |||||| |||||| |||||||||||||||| | ||||||| |
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| T |
9391978 |
ttctgttttgtgaattagattcctattttttaatttttgttctttctaatggaacacaaactacaagactgtg |
9391906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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