View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17752_low_26 (Length: 325)

Name: NF17752_low_26
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17752_low_26
NF17752_low_26
[»] chr5 (14 HSPs)
chr5 (229-312)||(10223279-10223362)
chr5 (109-195)||(10223442-10223529)
chr5 (91-169)||(5361503-5361582)
chr5 (18-169)||(6641938-6642095)
chr5 (85-169)||(6642070-6642155)
chr5 (85-169)||(8942882-8942967)
chr5 (18-169)||(27496022-27496179)
chr5 (61-169)||(30004075-30004184)
chr5 (85-169)||(42092228-42092313)
chr5 (70-169)||(28574661-28574761)
chr5 (92-165)||(8943218-8943292)
chr5 (85-170)||(29440293-29440379)
chr5 (85-169)||(2802892-2802977)
chr5 (85-169)||(21250274-21250359)
[»] chr2 (15 HSPs)
chr2 (60-169)||(7438420-7438530)
chr2 (76-169)||(5482889-5482983)
chr2 (60-169)||(43671260-43671370)
chr2 (77-169)||(7881634-7881727)
chr2 (85-169)||(11974166-11974251)
chr2 (85-169)||(29683594-29683679)
chr2 (85-169)||(33616014-33616099)
chr2 (85-169)||(45638077-45638162)
chr2 (60-169)||(28582459-28582569)
chr2 (84-169)||(34334547-34334633)
chr2 (18-110)||(5483015-5483112)
chr2 (85-169)||(33615756-33615841)
chr2 (85-157)||(40343703-40343775)
chr2 (60-128)||(4603595-4603663)
chr2 (58-110)||(28182263-28182315)
[»] chr8 (26 HSPs)
chr8 (60-169)||(9779115-9779225)
chr8 (85-169)||(29276637-29276722)
chr8 (60-169)||(15891761-15891871)
chr8 (84-169)||(29457135-29457221)
chr8 (85-169)||(6121524-6121609)
chr8 (85-170)||(9117518-9117604)
chr8 (60-169)||(15315176-15315286)
chr8 (60-169)||(15495545-15495655)
chr8 (84-169)||(31826850-31826936)
chr8 (60-169)||(42691913-42692023)
chr8 (85-169)||(23404083-23404168)
chr8 (70-169)||(15891648-15891748)
chr8 (60-128)||(27702445-27702513)
chr8 (86-169)||(27702602-27702686)
chr8 (58-110)||(29218481-29218533)
chr8 (91-169)||(31827161-31827240)
chr8 (60-169)||(23275339-23275449)
chr8 (60-169)||(23403826-23403936)
chr8 (60-169)||(35435388-35435498)
chr8 (84-169)||(35435584-35435670)
chr8 (18-169)||(7080-7237)
chr8 (85-169)||(22444621-22444706)
chr8 (85-169)||(44728126-44728211)
chr8 (85-169)||(44728390-44728475)
chr8 (85-169)||(15315117-15315201)
chr8 (85-169)||(15495486-15495570)
[»] chr1 (20 HSPs)
chr1 (70-169)||(4965046-4965146)
chr1 (69-170)||(5739476-5739578)
chr1 (85-169)||(29987221-29987306)
chr1 (91-169)||(1102618-1102697)
chr1 (60-170)||(15615382-15615493)
chr1 (64-170)||(32712181-32712288)
chr1 (18-169)||(1102678-1102835)
chr1 (85-169)||(20491720-20491805)
chr1 (85-169)||(39834008-39834093)
chr1 (60-188)||(18088066-18088197)
chr1 (91-169)||(20492020-20492099)
chr1 (94-169)||(41810951-41811026)
chr1 (60-169)||(4765016-4765126)
chr1 (84-169)||(4765100-4765186)
chr1 (76-169)||(41810745-41810839)
chr1 (76-169)||(45721147-45721241)
chr1 (76-169)||(49113167-49113261)
chr1 (58-111)||(4975013-4975066)
chr1 (85-168)||(18030544-18030628)
chr1 (60-128)||(29987323-29987391)
[»] chr7 (17 HSPs)
chr7 (60-169)||(45443365-45443475)
chr7 (76-169)||(48840026-48840119)
chr7 (60-169)||(44941188-44941298)
chr7 (70-170)||(18808102-18808203)
chr7 (91-169)||(37042994-37043073)
chr7 (60-169)||(8919567-8919677)
chr7 (85-169)||(18942313-18942398)
chr7 (85-169)||(42430633-42430718)
chr7 (85-169)||(42759217-42759302)
chr7 (60-128)||(45203758-45203826)
chr7 (61-128)||(29036317-29036384)
chr7 (60-169)||(22563895-22564005)
chr7 (60-110)||(22642031-22642081)
chr7 (85-169)||(3173240-3173325)
chr7 (85-169)||(47193512-47193597)
chr7 (85-169)||(48840252-48840337)
chr7 (118-169)||(47332353-47332405)
[»] chr3 (15 HSPs)
chr3 (60-169)||(10820298-10820408)
chr3 (84-169)||(33623357-33623443)
chr3 (85-169)||(13712307-13712392)
chr3 (85-169)||(17579762-17579847)
chr3 (60-111)||(29230972-29231023)
chr3 (60-169)||(11871472-11871582)
chr3 (18-110)||(11218195-11218292)
chr3 (70-169)||(11218258-11218358)
chr3 (61-112)||(23232315-23232366)
chr3 (85-167)||(48517931-48518014)
chr3 (58-128)||(47220346-47220416)
chr3 (85-169)||(10820238-10820323)
chr3 (85-169)||(17580068-17580153)
chr3 (85-168)||(8112812-8112896)
chr3 (91-169)||(54924091-54924168)
[»] chr4 (22 HSPs)
chr4 (76-169)||(50523077-50523171)
chr4 (85-165)||(18598212-18598293)
chr4 (90-169)||(21956040-21956120)
chr4 (70-169)||(40998185-40998284)
chr4 (84-169)||(40998429-40998515)
chr4 (85-169)||(18598537-18598622)
chr4 (85-169)||(25154799-25154884)
chr4 (85-169)||(29031282-29031367)
chr4 (85-169)||(29043401-29043486)
chr4 (70-169)||(13846613-13846713)
chr4 (91-169)||(34979497-34979576)
chr4 (91-169)||(40998125-40998204)
chr4 (60-170)||(41898194-41898305)
chr4 (84-169)||(21956368-21956454)
chr4 (91-169)||(25363566-25363647)
chr4 (76-169)||(41898136-41898229)
chr4 (85-169)||(14966429-14966514)
chr4 (85-169)||(15631340-15631425)
chr4 (61-110)||(20421227-20421276)
chr4 (61-169)||(25154602-25154711)
chr4 (91-170)||(6112013-6112093)
chr4 (70-169)||(41898318-41898418)
[»] scaffold0062 (1 HSPs)
scaffold0062 (85-169)||(11733-11818)
[»] scaffold0182 (2 HSPs)
scaffold0182 (18-128)||(22311-22426)
scaffold0182 (91-170)||(22449-22529)
[»] scaffold0051 (1 HSPs)
scaffold0051 (91-169)||(60491-60570)
[»] chr6 (3 HSPs)
chr6 (91-169)||(24012518-24012597)
chr6 (61-128)||(33040915-33040982)
chr6 (82-169)||(33040998-33041086)
[»] scaffold0220 (1 HSPs)
scaffold0220 (70-169)||(21975-22075)


Alignment Details
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 10223362 - 10223279
Alignment:
Q  229 cttactcagaatttcaatcttaaatttctaaagtcaaatttgatgcctaacacttctaaaatgttatacttttttctttaacct 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  10223362 cttactcagaatttcaatcttaaatttctaaagtcaaatttgatgcctagcacttctaaaatgttttacttttttctttaacct 10223279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 10223529 - 10223442
Alignment:
Q  109 aaaaatctgtctgaaaccttcgaac-ttaaaacacctatctaaaacaaacatgaaacttaaaatctatccaaaacaaactcgtaattt 195  Q
    |||||||| |||||||| ||||||  ||||| || ||||||||||||||||||||||||||||| ||||  ||||||||||| |||||    
T  10223529 aaaaatctatctgaaactttcgaaaattaaagcatctatctaaaacaaacatgaaacttaaaatttatctgaaacaaactcgaaattt 10223442  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 5361503 - 5361582
Alignment:
Q  91 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||||||||||||| ||||| ||||||||||| | ||||||||  | |||||| ||||||||||| ||||||||    
T  5361503 aaacaaactcgaaatttaaagaatctatctgaaaccttagaaacttaaatgatctatctgaaacaaacatgcaacttaaa 5361582  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 6641938 - 6642095
Alignment:
Q  18 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 112  Q
    |||||||||||||| ||||| |||  | |||||||| |||||     |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||      
T  6641938 tttcgagtttatttcagataggtcctttctatcaacctccgttaagccaaagttgatttgatagaaaggaactatctgaaacaaactcgaaacttaaagg 6642037  T
Q  113 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    | || ||||||||||| | ||||||||  |||||||  ||||||||  ||||||||||    
T  6642038 acctatctgaaaccttagaaacttaaaggacctatccgaaacaaactcgaaacttaaa 6642095  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 6642070 - 6642155
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  ||||||||||||||||| || ||||||||    
T  6642070 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatctaaaacaaacgtggaacttaaa 6642155  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 8942967 - 8942882
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| |||||| | || | ||||||||| ||| ||||||  |||||| | ||||||||||||||||||||    
T  8942967 tatccgaaacaaactcgaaacttaaaagacctatatgaaaccttagaaacttaaaggacctatatgaaacaaacatgaaacttaaa 8942882  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 27496022 - 27496179
Alignment:
Q  18 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 112  Q
    |||||||||| ||||||||| |||  | |||||||| |||||     |||||||||||||||| ||| ||  ||||  |||||||||||||||||||| |    
T  27496022 tttcgagtttgttttagataggtcctttctatcaacctccgttaagccaaagttgatttgatagaaaggacctatctgaaacaaactcgaaatttaaaga 27496121  T
Q  113 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    | || ||| ||||||| | ||||||||  || ||||  ||||||||  ||||||||||    
T  27496122 acctatctcaaaccttagaaacttaaaggacatatccgaaacaaactcgaaacttaaa 27496179  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 30004184 - 30004075
Alignment:
Q  61 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacat 159  Q
    |||||||||| |||| ||||||| ||||  ||| ||| ||||||||||||  | || ||||||||||| | ||||||||| || ||||| ||||||||      
T  30004184 aaagttgattcgatagaaatgatctatctgaaataaattcgaaatttaaaggacctatctgaaaccttagaaacttaaaagacatatctgaaacaaactc 30004085  T
Q  160 gaaacttaaa 169  Q
    ||||||||||    
T  30004084 gaaacttaaa 30004075  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 42092228 - 42092313
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||  ||| |||||| | || ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  42092228 tatccgaaacaaacttcaaacttaaaagacctatctgaaaccttagaaacttaaaggatctatctaaaacaaacatgaaacttaaa 42092313  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 28574661 - 28574761
Alignment:
Q  70 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaa 168  Q
    |||||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||||| ||| ||||||| | |||||| ||||||| |||||||||||    
T  28574661 ttgatagaaatgacctatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaagatctatctgaaacaaatatgaaacttaa 28574760  T
Q  169 a 169  Q
    |    
T  28574761 a 28574761  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 8943218 - 8943292
Alignment:
Q  92 aacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaact 165  Q
    ||||||||||||| ||||| || || ||||||||||| | ||||||||  | |||||| ||||||||||||||||    
T  8943218 aacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaact 8943292  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 29440293 - 29440379
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaaa 170  Q
    ||||| |||||||||| ||| ||||||||  | |||||||||||  || ||||||  | |||||||||||||| |||||||||||||    
T  29440293 tatccgaaacaaactccaaacttaaaaaacatatctgaaaccttaaaaacttaaaggatctatctaaaacaaatatgaaacttaaaa 29440379  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 2802977 - 2802892
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||| ||| |||||  | || ||| ||||||| ||| ||||||| | |||||| ||||||||||||||||||||    
T  2802977 tatccgaaacaaactccaaacttaaaggacctatctaaaaccttagaaacttaaaagatctatctgaaacaaacatgaaacttaaa 2802892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 21250359 - 21250274
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| ||||||||||||||  ||||  |||| ||||||||||| ||| ||| ||  |||||||| |||||||| |||||||||||    
T  21250359 tatccgaaacaaactcgaaacataaaggatctatctgaaaccttagaaactttaaggacctatctgaaacaaacctgaaacttaaa 21250274  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 7438420 - 7438530
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaaca 158  Q
    ||||||| |||||||| ||| ||| ||||  ||||||||||||||||||||  | || ||||||||||| ||| ||||||| |||||||||||||||||     
T  7438420 caaagtttatttgatagaaaggatctatctgaaacaaactcgaaatttaaaggacctatctgaaaccttagaaacttaaaagacctatctaaaacaaacg 7438519  T
Q  159 tgaaacttaaa 169  Q
    |||||||||||    
T  7438520 tgaaacttaaa 7438530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 5482983 - 5482889
Alignment:
Q  76 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||| ||| ||||| |||||||||||||| |||||| | || ||||||||||| | ||||||||  | |||||| ||||||||||||||||||||    
T  5482983 taaaggatctatccgaaacaaactcgaaacttaaaacacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 5482889  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 43671370 - 43671260
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||| ||  ||||  ||||||||| |||| |||||| | || ||||||||||| | ||||||||| |||||||  ||||||||     
T  43671370 caaagttgatttgatagaaaggacctatctgaaacaaacttgaaacttaaaagacctatctgaaaccttagaaacttaaaagacctatccgaaacaaact 43671271  T
Q  159 tgaaacttaaa 169  Q
     ||||||||||    
T  43671270 cgaaacttaaa 43671260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 169
Target Start/End: Complemental strand, 7881727 - 7881634
Alignment:
Q  77 aaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||| |||| |||||||||||||||| |||||  |||| ||||||||||| | || ||||||  ||||| | |||||||| |||||||||||    
T  7881727 aaatgacatattcaaaacaaactcgaaacttaaaggatctatctgaaaccttagaaatttaaaaggcctatttgaaacaaacgtgaaacttaaa 7881634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 11974166 - 11974251
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| ||||||||||||||||||||  || | |||||||||||   ||||||||| || ||||| |||||||| |||||||||||    
T  11974166 tatccgaaacaaactcgaaatttaaaggatttatctgaaaccttataaacttaaaagacatatctgaaacaaacgtgaaacttaaa 11974251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 29683679 - 29683594
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||||||||||||| |||||  | || ||||||||||| | ||||||||  |||||||| |||||||| ||||| |||||    
T  29683679 tatccaaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaagaacctatctgaaacaaacgtgaaatttaaa 29683594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 33616014 - 33616099
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||| ||| |||||  | || ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  33616014 tatccgaaacaaactcaaaacttaaagtacctatctgaaaccttagaaacttaaaggatctatctaaaacaaacatgaaacttaaa 33616099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 45638162 - 45638077
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| |||||  | || |||||||| || ||| ||||||  |||||||| ||||||||||||||||||||    
T  45638162 tatccgaaacaaactcgaaacttaaaggacctatctgaaacgttagaaacttaaaggacctatctgaaacaaacatgaaacttaaa 45638077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 28582569 - 28582459
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||| | | ||||||||  |||||||  ||||||||     
T  28582569 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaaggacctatctgaaaccatagaaacttaaaggacctatccgaaacaaact 28582470  T
Q  159 tgaaacttaaa 169  Q
     ||||||||||    
T  28582469 cgaaacttaaa 28582459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 34334633 - 34334547
Alignment:
Q  84 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||| |||||||||||||| |||||  | || |||||||||||  || ||||||  | |||||| ||||||||||||||||||||    
T  34334633 atatcccaaacaaactcgaaacttaaatgacctatctgaaaccttaaaaacttaaaggatctatctgaaacaaacatgaaacttaaa 34334547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 5483015 - 5483112
Alignment:
Q  18 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 110  Q
    |||||||||| ||| |||||||||| | |||||||| |||||     |||||||||||||||| ||||||  ||||  |||||||||| ||| |||||    
T  5483015 tttcgagtttgtttcagataagtcatttctatcaacctccgttaaaccaaagttgatttgatagaaatgacctatctgaaacaaactcaaaacttaaa 5483112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 33615841 - 33615756
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| ||||||||||||||||||||  |||| | ||||||||| | ||||||||  || ||||| ||| |||| |||||||||||    
T  33615841 tatccgaaacaaactcgaaatttaaaggatctatatgaaaccttagaaacttaaagaacttatctgaaataaacgtgaaacttaaa 33615756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 40343703 - 40343775
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaac 157  Q
    ||||| |||||||||||||| ||||| |  || ||||||||||| ||| |||||| ||||||||||||||||||    
T  40343703 tatccgaaacaaactcgaaacttaaagac-ctatctgaaaccttagaaacttaaagcacctatctaaaacaaac 40343775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 4603663 - 4603595
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 128  Q
    |||||||||||||||| ||||||  || |  |||||||||||||| ||||| || || |||||||||||    
T  4603663 caaagttgatttgatagaaatgacctaactgaaacaaactcgaaaattaaagaacctatctgaaacctt 4603595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 28182315 - 28182263
Alignment:
Q  58 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 110  Q
    |||||||||||||||||| ||||||   ||| ||||||||||||||| |||||    
T  28182315 gtcaaagttgatttgatagaaatgaccaatctaaaacaaactcgaaacttaaa 28182263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 9779115 - 9779225
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||| ||| ||||  |||||||||||||| |||||  | || |||||||||||  || ||||||  ||||||||||||||||||    
T  9779115 caaagttgatttgatagaaaggatctatctgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaggacctatctaaaacaaaca 9779214  T
Q  159 tgaaacttaaa 169  Q
    |||||||||||    
T  9779215 tgaaacttaaa 9779225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 29276722 - 29276637
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||||||||||||| ||||| || || ||||||||||| | ||||||||  |||||||| ||||||||||||||||||||    
T  29276722 tatccaaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggacctatctgaaacaaacatgaaacttaaa 29276637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 15891761 - 15891871
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||  |||| ||| ||||||| | ||||||||  |||||||| ||||||||     
T  15891761 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaacttaaaggatctatctaaaaccttagaaacttaaaggacctatctgaaacaaact 15891860  T
Q  159 tgaaacttaaa 169  Q
    | |||||||||    
T  15891861 tcaaacttaaa 15891871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 29457221 - 29457135
Alignment:
Q  84 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||| |||||||||||||| ||||| || || ||||||| ||| ||| ||||||| |||||||| ||||||||||||||||||||    
T  29457221 atatccgaaacaaactcgaaacttaaagaacctatctgaaatcttagaaacttaaaagacctatctgaaacaaacatgaaacttaaa 29457135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 6121609 - 6121524
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| ||||| || || ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  6121609 tatccgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggatctatctaaaacaaacatgaaacttaaa 6121524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 170
Target Start/End: Complemental strand, 9117604 - 9117518
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaaa 170  Q
    |||||||||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| |||||||||||||||||||||    
T  9117604 tatccaaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaaa 9117518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 15315286 - 15315176
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||||||  ||||| ||| |||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  |||||||||    
T  15315286 caaagttgatttgatagaaatgacctatccgaaataaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggacctatccgaaacaaaca 15315187  T
Q  159 tgaaacttaaa 169  Q
     ||||||||||    
T  15315186 cgaaacttaaa 15315176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 15495655 - 15495545
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||||||  ||||| ||| |||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  |||||||||    
T  15495655 caaagttgatttgatagaaatgacctatccgaaataaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggacctatccgaaacaaaca 15495556  T
Q  159 tgaaacttaaa 169  Q
     ||||||||||    
T  15495555 cgaaacttaaa 15495545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 31826936 - 31826850
Alignment:
Q  84 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||||||| |||| |||||||||||    
T  31826936 atatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatctaaaataaacgtgaaacttaaa 31826850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 42692023 - 42691913
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||||||  |||| ||||||||||||||| |||||  | || ||| ||||||| | ||||||||  | |||| ||||||| ||     
T  42692023 caaagttgatttgatagaaatgacctatctaaaacaaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaggatctatttaaaacagacg 42691924  T
Q  159 tgaaacttaaa 169  Q
    |||||||||||    
T  42691923 tgaaacttaaa 42691913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 23404083 - 23404168
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||||||||| ||  | ||||||||||| | ||||||||  | |||||| | ||||||||||||||||||    
T  23404083 tatccgaaacaaactcgaaatttaaagaacatatctgaaaccttagtaacttaaaggatctatctgagacaaacatgaaacttaaa 23404168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 15891748 - 15891648
Alignment:
Q  70 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 168  Q
    |||||| |||||| |||||  |||||||||||||| |||||  |||| ||| ||||||| | ||||||||  |||||||| |||||||| | ||||||||    
T  15891748 ttgataaaaatgacatatctgaaacaaactcgaaacttaaaggatctatctaaaaccttagaaacttaaaggacctatctgaaacaaacttcaaacttaa 15891649  T
Q  169 a 169  Q
    |    
T  15891648 a 15891648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 27702513 - 27702445
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 128  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||  | || |||||||||||    
T  27702513 caaagttgatttgatagaaatgacatatcttaaacaaactcgaaacttaaaggacctatctgaaacctt 27702445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 27702602 - 27702686
Alignment:
Q  86 atccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  27702602 atccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggagctatctgaaacaaacatgaaacttaaa 27702686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 29218533 - 29218481
Alignment:
Q  58 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 110  Q
    |||||||||||||||||| ||||||| ||||  |||||||||||||| |||||    
T  29218533 gtcaaagttgatttgataaaaatgatctatctgaaacaaactcgaaacttaaa 29218481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 31827161 - 31827240
Alignment:
Q  91 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||| ||| |||||  | || ||||||||||| ||| ||||||| | |||||| ||||||||||||||||||||    
T  31827161 aaacaaactcaaaacttaaaggacctatctgaaaccttagaaacttaaaaaatctatctgaaacaaacatgaaacttaaa 31827240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 23275339 - 23275449
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||| ||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  ||||||||     
T  23275339 caaagttgatttaatagaaatgacctatctgaaacaaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggacctatccgaaacaaact 23275438  T
Q  159 tgaaacttaaa 169  Q
     ||||||||||    
T  23275439 cgaaacttaaa 23275449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 23403936 - 23403826
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  ||||||||     
T  23403936 caaagttgatttgatagaaaggacctatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatccgaaacaaact 23403837  T
Q  159 tgaaacttaaa 169  Q
     ||||||||||    
T  23403836 cgaaacttaaa 23403826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 35435498 - 35435388
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||| | |||||| |||||||      
T  35435498 caaagttgatttgatagaaaggacttatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaagatctatctgaaacaaatt 35435399  T
Q  159 tgaaacttaaa 169  Q
     ||||||||||    
T  35435398 cgaaacttaaa 35435388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 35435584 - 35435670
Alignment:
Q  84 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||| |||||||||||||| |||||  | || ||| ||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  35435584 atatccgaaacaaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 35435670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 7080 - 7237
Alignment:
Q  18 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 112  Q
    |||||||||| ||| ||||| |||| | |||||||| |||||     ||||||||||||| || ||| ||  ||||  |||||||||||||| |||||      
T  7080 tttcgagtttgtttcagataggtcatttctatcaacctccgttaagccaaagttgatttggtagaaaggacctatctgaaacaaactcgaaacttaaagg 7179  T
Q  113 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    | || ||||||||||| | ||||||||  || |||| |||||||||  ||||||||||    
T  7180 acctatctgaaaccttagaaacttaaaggacatatccaaaacaaactcgaaacttaaa 7237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 22444706 - 22444621
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| ||||| || || |||||||| || | ||||||||  |||||||  |||||||| |||||||||||    
T  22444706 tatccgaaacaaactcgaaacttaaagaacctatctgaaactttagaaacttaaaggacctatccgaaacaaacgtgaaacttaaa 22444621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 44728211 - 44728126
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| ||| ||||| |||| |||||  | |||||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  44728211 tatccgaaataaacttgaaacttaaaggacctgtctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 44728126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 44728390 - 44728475
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| ||||| ||||| |||||||||||   ||||||||  || | ||| |||||||| |||||||||||    
T  44728390 tatccgaaacaaactcgaaacttaaagaatctatctgaaaccttaaaaacttaaaggacttgtctgaaacaaacgtgaaacttaaa 44728475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 15315201 - 15315117
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||| ||||| |||||  |  | ||||||||||| ||| |||||  |||||||| |||||||| |||||||||||    
T  15315201 tatccgaaacaaacacgaaacttaaaggacttatctgaaaccttagaatttaaaggacctatctgaaacaaacgtgaaacttaaa 15315117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 15495570 - 15495486
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||| ||||| |||||  |  | ||||||||||| ||| |||||  |||||||| |||||||| |||||||||||    
T  15495570 tatccgaaacaaacacgaaacttaaaggacttatctgaaaccttagaatttaaaggacctatctgaaacaaacgtgaaacttaaa 15495486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 4965046 - 4965146
Alignment:
Q  70 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 168  Q
    |||||| ||||||| ||||  |||||||||| |||||||||| | || ||||||||||| | ||||||||  | ||||||||||||||||||||||||||    
T  4965046 ttgatagaaatgatctatctgaaacaaactcaaaatttaaaagacctatctgaaaccttagaaacttaaatgatctatctaaaacaaacatgaaacttaa 4965145  T
Q  169 a 169  Q
    |    
T  4965146 a 4965146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 5739476 - 5739578
Alignment:
Q  69 tttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaactta 167  Q
    ||||||| ||||||| ||||  |||||||||||||| ||||| || || ||||||||||| | ||||||||| | |||||| |||||||| |||||||||    
T  5739476 tttgatagaaatgatctatctgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaagatctatctgaaacaaacgtgaaactta 5739575  T
Q  168 aaa 170  Q
    |||    
T  5739576 aaa 5739578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 29987306 - 29987221
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| ||||| ||||| |||||||||||   ||||||||  |||||||| |||||||| |||||||||||    
T  29987306 tatccgaaacaaactcgaaacttaaagaatctatctgaaaccttaaaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 29987221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 1102697 - 1102618
Alignment:
Q  91 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaac-acctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||||||| ||||| ||  ||||||||||||| ||| || |||  ||||||||||||||||||||||| |||||    
T  1102697 aaacaaactcgaaacttaaagaacatgtctgaaaccttagaaatttaaaggacctatctaaaacaaacatgaaatttaaa 1102618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 15615382 - 15615493
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  |  | ||||||||||| | ||||||||  |||||||| ||||||||     
T  15615382 caaagttgatttgatagaaatgacttatctgaaacaaactcgaaacttaaaggacatatctgaaaccttagaaacttaaaggacctatctgaaacaaact 15615481  T
Q  159 tgaaacttaaaa 170  Q
     |||||||||||    
T  15615482 cgaaacttaaaa 15615493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 32712288 - 32712181
Alignment:
Q  64 gttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaa 162  Q
    |||||||| ||| ||| ||||||||| |||||||||||||| |||||  |  | ||||||| ||| | ||||||||  | |||||| |||||||||||||    
T  32712288 gttgatttaatagaaaagatatatccgaaacaaactcgaaacttaaaggacttatctgaaatcttagaaacttaaaggatctatctgaaacaaacatgaa 32712189  T
Q  163 acttaaaa 170  Q
    ||||||||    
T  32712188 acttaaaa 32712181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 1102835 - 1102678
Alignment:
Q  18 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 112  Q
    |||||||||| ||||||||| |||| | |||||||| |||||     |||||||||||||||| ||||||  ||||  ||| |||||||||| |||||      
T  1102835 tttcgagtttgttttagataggtcatttctatcaacctccgttaagtcaaagttgatttgatagaaatgacttatctgaaataaactcgaaacttaaagg 1102736  T
Q  113 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    | || ||||||| ||| | ||||||||   ||||||| ||||||||  ||||||||||    
T  1102735 acctatctgaaatcttagaaacttaaagggcctatctgaaacaaactcgaaacttaaa 1102678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 20491805 - 20491720
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| |||||  | || |||||||||||  || ||||||| | ||||| |||||||||||||||||||||    
T  20491805 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaagatctatccaaaacaaacatgaaacttaaa 20491720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 39834093 - 39834008
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||||||||||||| |||||  |  | ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  39834093 tatccaaaacaaactcgaaacttaaaggacttatctgaaaccttagaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 39834008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 18088197 - 18088066
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||  | |||||| ||||||||     
T  18088197 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaagtacctatctgaaaccttagaaacttaaaggatctatctgaaacaaact 18088098  T
Q  159 tgaaacttaaa--atctatccaaaacaaactc 188  Q
      |||||||||  |||||||  ||||||||||    
T  18088097 caaaacttaaaggatctatctgaaacaaactc 18088066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 20492020 - 20492099
Alignment:
Q  91 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  20492020 aaacaaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 20492099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 41810951 - 41811026
Alignment:
Q  94 caaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||||||||||  | || ||||||||||| |||  | ||| | |||||| ||||||||||||||||||||    
T  41810951 caaactcgaaatttaaaggacctatctgaaaccttagaaacttaaagatctatctgaaacaaacatgaaacttaaa 41811026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 4765016 - 4765126
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||| ||| ||||  |||||||||||||| ||||| || || ||||||| ||| | ||||||||  || ||||  ||||||||     
T  4765016 caaagttgatttgataaaaaggatttatctgaaacaaactcgaaacttaaagaacctatctgaaatcttagaaacttaaaggacatatccgaaacaaact 4765115  T
Q  159 tgaaacttaaa 169  Q
     ||||||||||    
T  4765116 cgaaacttaaa 4765126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 4765100 - 4765186
Alignment:
Q  84 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||| |||||||||||||| ||||| || || | | ||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  4765100 atatccgaaacaaactcgaaacttaaagaacctatttaaaaccttagaaacttaaagaacctatctgaaacaaacgtgaaacttaaa 4765186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 41810839 - 41810745
Alignment:
Q  76 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||||| |||||| |||||||||  ||| |||||  | || ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  41810839 taaatgacatatccgaaacaaacttaaaacttaaaggacctatctgaaaccttagaaacttaaataacctatctgaaacaaacgtgaaacttaaa 41810745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 45721241 - 45721147
Alignment:
Q  76 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||| ||||| |||||| ||||||| |||||  |  | ||||||||||| ||| ||||||| | ||| || ||||||||||||||||||||    
T  45721241 taaatgatctatccgaaacaagctcgaaacttaaaggacatatctgaaaccttagaaacttaaaagatctacctgaaacaaacatgaaacttaaa 45721147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 49113167 - 49113261
Alignment:
Q  76 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||| ||| ||||| |||||||||||||| |||||  |  ||||||||||||| | ||||||||  | |||||| ||| ||||||||||||||||    
T  49113167 taaaggatctatccgaaacaaactcgaaacttaaaggacatgtctgaaaccttagaaacttaaaggatctatctgaaataaacatgaaacttaaa 49113261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 4975013 - 4975066
Alignment:
Q  58 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaa 111  Q
    |||||||||||||||||| |||||| |||||  ||||||||| |||| ||||||    
T  4975013 gtcaaagttgatttgatagaaatgacatatctgaaacaaacttgaaacttaaaa 4975066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 18030544 - 18030628
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 168  Q
    |||||||||||||||||||| ||||| ||| | ||||||||||| | || |||||  || ||||| ||||||| |||||| ||||    
T  18030544 tatccaaaacaaactcgaaacttaaataatatatctgaaaccttagaaatttaaaggacttatctgaaacaaatatgaaatttaa 18030628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 29987391 - 29987323
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 128  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  | || |||||||||||    
T  29987391 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaaggacctatctgaaacctt 29987323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 45443365 - 45443475
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacct-tcgaacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||||||  |||| ||||||||||||||| |||||  | || ||||||||||    ||||||||  |||||||||||||||||     
T  45443365 caaagttgatttgatagaaatgacctatctaaaacaaactcgaaacttaaaggacctatctgaaacctcaaaaacttaaaggacctatctaaaacaaacg 45443464  T
Q  159 tgaaacttaaa 169  Q
    |||||||||||    
T  45443465 tgaaacttaaa 45443475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 48840119 - 48840026
Alignment:
Q  76 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||| ||| ||||| |||||||||| ||||||||| || || ||||||||||| ||| |||||  |||||||| |||||||| |||||||||||    
T  48840119 taaaggatctatccgaaacaaactcaaaatttaaagaacctatctgaaaccttagaatttaaaggacctatctgaaacaaacgtgaaacttaaa 48840026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 44941188 - 44941298
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||||||||||||  |||||||||||||| |||||  |  | ||||||| ||| | ||||||||  ||||||| |||||||||     
T  44941188 caaagttgatttgatagaaatgatatatctgaaacaaactcgaaacttaaaggacttatctgaaatcttagaaacttaaaggacctatccaaaacaaact 44941287  T
Q  159 tgaaacttaaa 169  Q
     ||||||||||    
T  44941288 cgaaacttaaa 44941298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 170
Target Start/End: Original strand, 18808102 - 18808203
Alignment:
Q  70 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaa 168  Q
    |||||| ||||||  ||||  ||||||||||||||||||||  |||| ||| ||||||| ||| | ||||  ||||||||||||||||| ||||||||||    
T  18808102 ttgatagaaatgacctatctgaaacaaactcgaaatttaaaggatctatctaaaaccttagaaacataaaggacctatctaaaacaaacgtgaaacttaa 18808201  T
Q  169 aa 170  Q
    ||    
T  18808202 aa 18808203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 37043073 - 37042994
Alignment:
Q  91 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||||||| |||||  |||| ||||||||||| ||| |||||| || |||||  ||||||||||||||||||||    
T  37043073 aaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaagcatctatcctaaacaaacatgaaacttaaa 37042994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 8919677 - 8919567
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||||||  ||||  |||||||||| ||| |||||  | || |||||||||||   ||||||||| |||||||  ||||||||     
T  8919677 caaagttgatttgatagaaatgacctatctgaaacaaactcaaaacttaaaggacctatctgaaaccttaaaaacttaaaagacctatccgaaacaaact 8919578  T
Q  159 tgaaacttaaa 169  Q
    |||||||||||    
T  8919577 tgaaacttaaa 8919567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 18942398 - 18942313
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| ||||||||||||||||||||  | || ||||||||||  ||| ||||||  | |||||| ||||||||||||||||||||    
T  18942398 tatccgaaacaaactcgaaatttaaaggacctatctgaaacctcagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 18942313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 42430633 - 42430718
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  42430633 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 42430718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 42759217 - 42759302
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| ||||| || || ||||||||||| | ||||||||| |||||| | ||| |||| |||||||||||    
T  42759217 tatccgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaagacctatatgaaataaacgtgaaacttaaa 42759302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 45203758 - 45203826
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 128  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||  | || |||||||||||    
T  45203758 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaacttaaaggacctatctgaaacctt 45203826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 29036317 - 29036384
Alignment:
Q  61 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 128  Q
    ||||||||||||||| ||||||   |||| |||||||||||||| ||||| || || |||||||||||    
T  29036317 aaagttgatttgatagaaatgaccaatccgaaacaaactcgaaacttaaagaacctatctgaaacctt 29036384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 22563895 - 22564005
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||| || |||||  |||||||||||||| |||||  | || ||||||| ||| | ||||||||  |||||||  ||||||||     
T  22563895 caaagttgatttgatagaaaggacatatcggaaacaaactcgaaacttaaaggacctatctgaaatcttagaaacttaaaggacctatccgaaacaaact 22563994  T
Q  159 tgaaacttaaa 169  Q
     ||||||||||    
T  22563995 cgaaacttaaa 22564005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 22642031 - 22642081
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 110  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||    
T  22642031 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaacttaaa 22642081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 3173325 - 3173240
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| |||||  | || |||||||||||  || ||||||  | |||||| ||||||||||||||||||||    
T  3173325 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaggatctatctgaaacaaacatgaaacttaaa 3173240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 47193512 - 47193597
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| ||| |||||||||| |||||  | || ||| ||||||| ||| ||||||| | |||||||||||| ||||||||||||||    
T  47193512 tatccgaaataaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaagatctatctaaaacatacatgaaacttaaa 47193597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 48840252 - 48840337
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| |||||  | || | ||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  48840252 tatccgaaacaaactcgaaacttaaaggacctatttgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 48840337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 47332405 - 47332353
Alignment:
Q  118 tctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  47332405 tctgaaaccttagaaacttaaatgatctatctaaaacaaacatgaaacttaaa 47332353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 10820408 - 10820298
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| ||||| || || ||||||||||| | ||||||||| |||||||  ||||||||     
T  10820408 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaagacctatccgaaacaaact 10820309  T
Q  159 tgaaacttaaa 169  Q
     ||||||||||    
T  10820308 cgaaacttaaa 10820298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 33623357 - 33623443
Alignment:
Q  84 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||| |||||||||||||| |||||  |||| ||||||||||| | ||||||||  |||||||||||||| || |||||||||||    
T  33623357 atatccgaaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaaggacctatctaaaacagacgtgaaacttaaa 33623443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 13712307 - 13712392
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| ||||| || || ||||||||||| | ||||||||  |||||||| |||||||| |||||||||||    
T  13712307 tatccgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 13712392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 17579847 - 17579762
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||| ||||||||||||||||||||    
T  17579847 tatccgaaacaaactcgaaacttaaagcacctatctgaaaccttagaaacttaaagaacctatctgaaacaaacatgaaacttaaa 17579762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 29231023 - 29230972
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaa 111  Q
    |||||||||||||||| |||||| |||||  |||||||||||||||||||||    
T  29231023 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaatttaaaa 29230972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 11871582 - 11871472
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    ||||||||| |||||| ||||||  |||| ||||||||||||||| |||||| | || ||||||||||| | ||||||||  ||||||   ||||||||     
T  11871582 caaagttgacttgatagaaatgacctatctaaaacaaactcgaaacttaaaagacctatctgaaaccttagaaacttaaaggacctatacgaaacaaact 11871483  T
Q  159 tgaaacttaaa 169  Q
     ||||||||||    
T  11871482 cgaaacttaaa 11871472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 11218292 - 11218195
Alignment:
Q  18 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 110  Q
    |||||||||||||| ||||| |||| | ||||||||||||||     |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||    
T  11218292 tttcgagtttatttcagataggtcatttctatcaacatccgttaagccaaagttgatttgatagaaaggacctatctgaaacaaactcgaaacttaaa 11218195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 11218258 - 11218358
Alignment:
Q  70 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 168  Q
    |||||| ||||||  ||||  ||| ||||||||||||||||  |||| ||||||||||| | ||||||||  || ||||| |||||||| ||||||||||    
T  11218258 ttgatagaaatgacctatctgaaataaactcgaaatttaaaggatctatctgaaaccttagaaacttaaaggacttatctgaaacaaacttgaaacttaa 11218357  T
Q  169 a 169  Q
    |    
T  11218358 a 11218358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 23232366 - 23232315
Alignment:
Q  61 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 112  Q
    ||||||||||||||| ||| || |||||| |||||||||||||| |||||||    
T  23232366 aaagttgatttgatagaaaagacatatccgaaacaaactcgaaacttaaaaa 23232315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 48518014 - 48517931
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaactta 167  Q
    ||||| |||||||||||||| |||||  | || ||| ||||||| ||| ||||||  | |||||||||||||||||||||||||    
T  48518014 tatccgaaacaaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaggatctatctaaaacaaacatgaaactta 48517931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 47220416 - 47220346
Alignment:
Q  58 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 128  Q
    |||||||||||||||||| ||||||| |||   |||||||||||||| |||||| | || ||| |||||||    
T  47220416 gtcaaagttgatttgatagaaatgatctatgtgaaacaaactcgaaacttaaaagacctatctaaaacctt 47220346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 10820323 - 10820238
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| ||||| ||  | ||||||||||| | ||||||||  | |||||| |||||||| |||||||||||    
T  10820323 tatccgaaacaaactcgaaacttaaagaacatatctgaaaccttagaaacttaaaggatctatctgaaacaaacgtgaaacttaaa 10820238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 17580068 - 17580153
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| ||| |||||||||| ||||||||  | ||| ||||||| ||| ||||||| | ||||||||||||||||| ||| |||||    
T  17580068 tatccgaaataaactcgaaacttaaaaaacttatctaaaaccttagaaacttaaaaaatctatctaaaacaaacataaaatttaaa 17580153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 8112812 - 8112896
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaac-acctatctaaaacaaacatgaaacttaa 168  Q
    |||||||||||||||||||| || ||  |  | ||||||||||| ||| || |||  ||||||||||||||||| ||||||||||    
T  8112812 tatccaaaacaaactcgaaactttaaggacttatctgaaaccttagaaatttaaaggacctatctaaaacaaacgtgaaacttaa 8112896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 54924091 - 54924168
Alignment:
Q  91 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||||||| ||||| || || ||||||||||| | ||||||||  |  |||||||||||||||| |||||||||    
T  54924091 aaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaa--aggtatctaaaacaaacataaaacttaaa 54924168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 50523171 - 50523077
Alignment:
Q  76 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||| ||| ||||| |||||||||||||| ||||| ||||| || |||||| | ||| ||||||  ||||||||||||||||| |||||||||||    
T  50523171 taaaggatctatccgaaacaaactcgaaacttaaagaatctatccgaaaccatagaaacttaaatgacctatctaaaacaaacgtgaaacttaaa 50523077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 18598293 - 18598212
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaact 165  Q
    ||||| ||||||||||||||||||||  |||| ||||||||||| | ||||||||  |||||||| |||||||| |||||||    
T  18598293 tatccgaaacaaactcgaaatttaaatgatctatctgaaaccttagaaacttaaaggacctatctgaaacaaacttgaaact 18598212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 21956120 - 21956040
Alignment:
Q  90 aaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||||||||||||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  21956120 aaaacaaactcgaaatttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 21956040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 40998284 - 40998185
Alignment:
Q  70 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||| ||| || |||||  |||||||||||||| |||||  | || ||||||||||| |||||||||  |||||||| ||||||||  ||||||||||    
T  40998284 ttgatagaaaggacatatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaacttaaaggacctatctgaaacaaactcgaaacttaaa 40998185  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 40998429 - 40998515
Alignment:
Q  84 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||| |||||||||||||| ||||| || || |||||||||||   ||||||||  || |||||||||||||| |||||||||||    
T  40998429 atatccgaaacaaactcgaaacttaaagaacctatctgaaaccttataaacttaaagaacatatctaaaacaaacgtgaaacttaaa 40998515  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 18598537 - 18598622
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| |||| |  ||||||||||||||||| |||||||||||    
T  18598537 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttagaggacctatctaaaacaaacttgaaacttaaa 18598622  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 25154799 - 25154884
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||| ||  |||||  | |||||||||||||| ||| ||||||| | |||||| ||||||||||||||||||||    
T  25154799 tatccgaaacaaactctaatcttaaaggacctgtctgaaaccttagaaacttaaaagatctatctgaaacaaacatgaaacttaaa 25154884  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 29031367 - 29031282
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| |||||  | || ||||||| ||| ||| ||||||| || |||||||||||||| |||||||||||    
T  29031367 tatccgaaacaaactcgaaacttaaaggacctatctgaaatcttagaaacttaaaagacttatctaaaacaaacgtgaaacttaaa 29031282  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 29043486 - 29043401
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| |||||  | || ||||||| ||| ||| ||||||| || |||||||||||||| |||||||||||    
T  29043486 tatccgaaacaaactcgaaacttaaaggacctatctgaaatcttagaaacttaaaagacttatctaaaacaaacgtgaaacttaaa 29043401  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 13846713 - 13846613
Alignment:
Q  70 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 168  Q
    |||||||||| ||  ||||  |||||||||||||| |||||| | || ||||||||||| | ||||||||  | |||||| ||||||||||||| |||||    
T  13846713 ttgatataaaggacctatctgaaacaaactcgaaacttaaaagacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaccttaa 13846614  T
Q  169 a 169  Q
    |    
T  13846613 a 13846613  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 34979576 - 34979497
Alignment:
Q  91 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  34979576 aaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 34979497  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 40998204 - 40998125
Alignment:
Q  91 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||||||| |||||  | || |||||||| || | ||||||||| | ||||||||||||||||||||| |||||    
T  40998204 aaacaaactcgaaacttaaaggacctatctgaaactttagtaacttaaaagatctatctaaaacaaacatgaaatttaaa 40998125  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 170
Target Start/End: Complemental strand, 41898305 - 41898194
Alignment:
Q  60 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 158  Q
    ||||||| |||||||||||| ||  ||||  |||||||||||||| |||||  |||| ||||||||||| | ||||||||  | |||||  ||||||||     
T  41898305 caaagtttatttgatataaaagacctatctgaaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaaggatctatccgaaacaaact 41898206  T
Q  159 tgaaacttaaaa 170  Q
     |||||||||||    
T  41898205 cgaaacttaaaa 41898194  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 21956368 - 21956454
Alignment:
Q  84 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||| |||||||||||||| |||||  | || |||||||||||  || ||||||  |||||||  ||||||||||||||||||||    
T  21956368 atatccgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaggacctatccgaaacaaacatgaaacttaaa 21956454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 25363566 - 25363647
Alignment:
Q  91 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaa--acacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||||||| |||||  |||| ||||||||||| ||| ||||||  | | |||||| ||||||||||||||||||||    
T  25363566 aaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaaggagatctatctgaaacaaacatgaaacttaaa 25363647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 41898229 - 41898136
Alignment:
Q  76 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||| ||| ||||| |||||||||||||| || ||||| || ||||||||||| | ||||||||  ||| |||| |||||||| |||||||||||    
T  41898229 taaaggatctatccgaaacaaactcgaaactt-aaaaacctatctgaaaccttagaaacttaaaggacccatctgaaacaaacgtgaaacttaaa 41898136  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 14966429 - 14966514
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| ||||| || || ||| ||||||| ||| ||||||  | ||||||||||||||||| ||| |||||    
T  14966429 tatccgaaacaaactcgaaacttaaagaacctatctaaaaccttagaaccttaaacgatctatctaaaacaaacataaaatttaaa 14966514  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 15631425 - 15631340
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||||||| |||||  |||| ||||||||||| | || |||||  |||||||| ||| ||||| ||||||||||    
T  15631425 tatccgaaacaaactcgaaacttaaaggatctatctgaaaccttagaaatttaaaggacctatctgaaataaacaggaaacttaaa 15631340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 20421276 - 20421227
Alignment:
Q  61 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 110  Q
    ||||||||||||||| ||||||  ||||  ||||||||||||||||||||    
T  20421276 aaagttgatttgatagaaatgacctatctgaaacaaactcgaaatttaaa 20421227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 25154711 - 25154602
Alignment:
Q  61 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacat 159  Q
    ||||||||||||||| ||||||  |||| |||||||||||||||  ||||  | || ||| ||||||| | ||||||||  || ||||| ||||||||      
T  25154711 aaagttgatttgatagaaatgacctatctaaaacaaactcgaaacctaaatgagctatcttaaaccttagaaacttaaaggacatatctgaaacaaactc 25154612  T
Q  160 gaaacttaaa 169  Q
    ||||||||||    
T  25154611 gaaacttaaa 25154602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 6112013 - 6112093
Alignment:
Q  91 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaaa 170  Q
    |||||||||||||| |||||  | || ||||||||||| | ||||||||| ||||||| |||||||||   ||||||||||    
T  6112013 aaacaaactcgaaacttaaacgacctatctgaaaccttagaaacttaaaagacctatccaaaacaaactccaaacttaaaa 6112093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 41898318 - 41898418
Alignment:
Q  70 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 168  Q
    |||||| ||| || ||||| ||||||||||||||| |||||  |  | ||||||||||| | ||||||||  | |||||| |||||||| ||||||||||    
T  41898318 ttgatagaaaggacatatctaaaacaaactcgaaacttaaaggacatatctgaaaccttagaaacttaaatgatctatctgaaacaaacttgaaacttaa 41898417  T
Q  169 a 169  Q
    |    
T  41898418 a 41898418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 11818 - 11733
Alignment:
Q  85 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||| |||||||||| ||| |||||  | || ||||||||||||||| ||||||  | |||||| ||||||||||||||||||||    
T  11818 tatccgaaacaaactccaaacttaaaggacctatctgaaaccttcgaaacttaaaggatctatctgaaacaaacatgaaacttaaa 11733  T

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Target: scaffold0182 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 22311 - 22426
Alignment:
Q  18 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 112  Q
    |||||||||| ||| |||||||||| | ||| |||| |||||     |||||||||||||||| ||||||  ||||  ||||||||||| || |||||||    
T  22311 tttcgagtttctttcagataagtcatttctaccaacctccgttaagccaaagttgatttgatagaaatgacctatctgaaacaaactcgtaacttaaaaa 22410  T
Q  113 atctgtctgaaacctt 128  Q
    |  | |||||||||||    
T  22411 acatatctgaaacctt 22426  T

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Target: scaffold0182; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 22449 - 22529
Alignment:
Q  91 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaaa 170  Q
    |||||||||||||| ||||| ||||| |||||||| || | || |||||  |||||||| |||||||| | ||||||||||    
T  22449 aaacaaactcgaaacttaaagaatctatctgaaactttagaaatttaaaggacctatctgaaacaaacgttaaacttaaaa 22529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 60570 - 60491
Alignment:
Q  91 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  60570 aaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaagtacctatctgaaacaaacgtgaaacttaaa 60491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 24012518 - 24012597
Alignment:
Q  91 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    ||||||||||||||||||||  | || ||||||||||| | ||||||||  | |||||| |||||||| |||||||||||    
T  24012518 aaacaaactcgaaatttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacgtgaaacttaaa 24012597  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 33040915 - 33040982
Alignment:
Q  61 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 128  Q
    ||||||||||| ||| ||||||| ||||  |||||||||||||| |||||| | || |||||||||||    
T  33040915 aaagttgattttatagaaatgatctatctgaaacaaactcgaaacttaaaagaactatctgaaacctt 33040982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 33040998 - 33041086
Alignment:
Q  82 atatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 169  Q
    |||||||| |||||||||  ||| |||||  | || ||||||||||| | ||||||||  |||||||| |||||||| |||||||||||    
T  33040998 atatatccgaaacaaacttcaaacttaaaggacctatctgaaaccttacaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 33041086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 21975 - 22075
Alignment:
Q  70 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 168  Q
    |||||| ||| ||| ||||  ||||||||||||||||||||  |||| ||||||||||| | ||||||||  ||||||   ||||||||  |||||||||    
T  21975 ttgatagaaaggatctatctgaaacaaactcgaaatttaaaggatctatctgaaaccttagaaacttaaaggacctatacgaaacaaactcgaaacttaa 22074  T
Q  169 a 169  Q
    |    
T  22075 a 22075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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