View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_27 (Length: 305)
Name: NF17752_low_27
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 48993756 - 48993480
Alignment:
| Q |
13 |
aaaatagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993756 |
aaaatagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactc |
48993657 |
T |
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| Q |
113 |
caattcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcatacc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993656 |
caattcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcatacc |
48993557 |
T |
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| Q |
213 |
ccctagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgtcataaaagacattggtg |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993556 |
ccctagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgtcataaaagacattggtg |
48993480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 22623977 - 22624233
Alignment:
| Q |
16 |
atagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaa |
115 |
Q |
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|||||||| |||| ||| || ||||||||||||||||| |||||||||||||||||||| ||||| ||||| | ||||| | ||| |||||| |||| |
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| T |
22623977 |
atagcactaggtgatgtgtactgcaacaaaagcacaaatctaaacatagcatcattttcgaccaagaaatttagcttattcgacaaagcaacaatcccaa |
22624076 |
T |
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| Q |
116 |
ttcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccc |
215 |
Q |
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| || | |||||| ||||||| ||||||||||||| || ||||| |||||| ||| ||||||| | || ||||||||||||||||| ||||||||||| |
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| T |
22624077 |
taccaagaacaggtagcaccaagagtcttgccacaacaataccaatagtagttctaagtccaagtctagactcatttggtccttcagcaagcataccccc |
22624176 |
T |
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| Q |
216 |
tagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgt |
272 |
Q |
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|| ||||||||||||| |||||||||||||||| | ||||| || ||||||||||| |
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| T |
22624177 |
taatataagcatcacagaaggcaccattgcaccacctaaaatctctaaactatctgt |
22624233 |
T |
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