View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17752_low_29 (Length: 290)

Name: NF17752_low_29
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17752_low_29
NF17752_low_29
[»] chr4 (2 HSPs)
chr4 (16-274)||(166870-167127)
chr4 (73-201)||(106800-106928)
[»] scaffold0013 (1 HSPs)
scaffold0013 (73-197)||(88553-88677)
[»] chr7 (1 HSPs)
chr7 (74-201)||(13055224-13055351)
[»] chr3 (1 HSPs)
chr3 (82-163)||(12134943-12135024)
[»] chr8 (10 HSPs)
chr8 (68-180)||(5656649-5656761)
chr8 (83-177)||(5718267-5718361)
chr8 (83-177)||(5686120-5686214)
chr8 (83-186)||(5638186-5638289)
chr8 (83-186)||(5651384-5651487)
chr8 (84-186)||(5602654-5602756)
chr8 (84-186)||(5602916-5603018)
chr8 (84-186)||(5632352-5632454)
chr8 (106-186)||(5602090-5602170)
chr8 (106-186)||(5638450-5638530)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 166870 - 167127
Alignment:
Q  16 atgaaataatatggctcttatagtcagtcaacatcaacataaaacctttgcctcttatttatttattgcaggaaatcacaggagcattcatgaaaaattg 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  166870 atgaaataatatggctcttatagtcagtcagcatcaacataaaacctttgcctcttatttatttattgcaggatatctcaggagcattcatgaaaaattg 166969  T
Q  116 tatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagtatcgtagacaggttccattgccttccactgtgactaccctttaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  166970 tatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagtatcgtagacaggttccattgccttccactgtgactacactttaa 167069  T
Q  216 agaatcaggcaaataaaaccaatcaagttgataagttaatttttcttatgctggatgtg 274  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  167070 a-aatcaggcaaataaaaccaatcaagttgataagttaatttttcttatgctggatgtg 167127  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 106800 - 106928
Alignment:
Q  73 tttatttattgcaggaaatcacaggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagta 172  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  106800 tttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagta 106899  T
Q  173 tcgtagacaggttccattgccttccactg 201  Q
    |||||||| ||||||||||||||||||||    
T  106900 tcgtagacgggttccattgccttccactg 106928  T

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Target: scaffold0013 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 73 - 197
Target Start/End: Complemental strand, 88677 - 88553
Alignment:
Q  73 tttatttattgcaggaaatcacaggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagta 172  Q
    ||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||  | |||||    
T  88677 tttatttatcgcaggaactcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagaaatatttttccattgtgggctctggctgagta 88578  T
Q  173 tcgtagacaggttccattgccttcc 197  Q
    |||||||| ||||||||||||||||    
T  88577 tcgtagacgggttccattgccttcc 88553  T

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Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 74 - 201
Target Start/End: Original strand, 13055224 - 13055351
Alignment:
Q  74 ttatttattgcaggaaatcacaggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagtat 173  Q
    |||||||||| ||| ||||||||||| |||| | ||||||||||||||||||||  |||||||||||||||||||||||||||||||| || | ||||||    
T  13055224 ttatttattgtagggaatcacaggagtattcttcaaaaattgtatgttgcattatacaatgtatagagatattttcccattgtgggctttagctgagtat 13055323  T
Q  174 cgtagacaggttccattgccttccactg 201  Q
    |||||| | ||||||||| |||||||||    
T  13055324 cgtagatatgttccattgtcttccactg 13055351  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 12135024 - 12134943
Alignment:
Q  82 tgcaggaaatcacaggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctct 163  Q
    ||||||||||||||||| || || |||||||||||||||||||||| |||||||||||| ||||||| ||| | ||||||||    
T  12135024 tgcaggaaatcacaggatcaatcgtgaaaaattgtatgttgcattatccaatgtatagaaatatttttccactatgggctct 12134943  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 180
Target Start/End: Complemental strand, 5656761 - 5656649
Alignment:
Q  68 tcttatttatttattgcaggaaatcacaggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaacc 167  Q
    |||||||||| | | ||||||| |||| |||| |||||||||||| || ||| |||||||| | |||||||||||||| || ||| ||||||||||| |     
T  5656761 tcttatttatgtttggcaggaactcacgggagtattcatgaaaaactgcatgctgcattacgctatgtatagagatatatttccaatgtgggctctagct 5656662  T
Q  168 gagtatcgtagac 180  Q
    || ||||||||||    
T  5656661 gaatatcgtagac 5656649  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 177
Target Start/End: Complemental strand, 5718361 - 5718267
Alignment:
Q  83 gcaggaaatcacaggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagtatcgta 177  Q
    ||||||| |||||| || |||||||||||| || ||| |||||||| |||||| ||||||||| |||||| ||||||||||| | || |||||||    
T  5718361 gcaggaactcacagcagtattcatgaaaaactgcatgctgcattacgcaatgtttagagatatattcccaatgtgggctctagctgaatatcgta 5718267  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 177
Target Start/End: Complemental strand, 5686214 - 5686120
Alignment:
Q  83 gcaggaaatcacaggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagtatcgta 177  Q
    ||||||| |||||| || |||||||||||| || ||| |||||||| | |||| ||||||||| |||||| ||||||||||| | || |||||||    
T  5686214 gcaggaactcacagcagtattcatgaaaaactgcatgctgcattacgccatgtttagagatatattcccaatgtgggctctagctgaatatcgta 5686120  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 5638289 - 5638186
Alignment:
Q  83 gcaggaaatcacaggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagtatcgtagacag 182  Q
    ||||||| | ||||| |||| | |||||| ||| ||||||||||| |||||||||||||||| ||| ||| ||| ||||||| | || ||||||| || |    
T  5638289 gcaggaactgacaggggcatccttgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgtaaacgg 5638190  T
Q  183 gttc 186  Q
    ||||    
T  5638189 gttc 5638186  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 5651487 - 5651384
Alignment:
Q  83 gcaggaaatcacaggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagtatcgtagacag 182  Q
    ||||||| | ||||| |||| | |||||| ||| ||||||||||| |||||||||||||||| ||| ||| ||| ||||||| | || ||||||| || |    
T  5651487 gcaggaactgacaggggcatccttgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgtaaacgg 5651388  T
Q  183 gttc 186  Q
    ||||    
T  5651387 gttc 5651384  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 5602654 - 5602756
Alignment:
Q  84 caggaaatcacaggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagtatcgtagacagg 183  Q
    |||||| | ||||| |||| | |||||| ||| ||||||||||| |||||||||||||||| ||| ||| ||| ||||||| | || ||||||| || ||    
T  5602654 caggaactgacaggggcatccttgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgtaaacggg 5602753  T
Q  184 ttc 186  Q
    |||    
T  5602754 ttc 5602756  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 5602916 - 5603018
Alignment:
Q  84 caggaaatcacaggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagtatcgtagacagg 183  Q
    |||||| | ||||| |||| | |||||| ||| ||||||||||| |||||||||||||||| ||| ||| ||| ||||||| | || ||||||| || ||    
T  5602916 caggaactgacaggggcatccttgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgtaaacggg 5603015  T
Q  184 ttc 186  Q
    |||    
T  5603016 ttc 5603018  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 5632454 - 5632352
Alignment:
Q  84 caggaaatcacaggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagtatcgtagacagg 183  Q
    |||||| | ||||| |||| | |||||| ||| ||||||||||| |||||||||||||||| ||| ||| ||| ||||||| | || ||||||| || ||    
T  5632454 caggaactgacaggggcatccttgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgtaaacggg 5632355  T
Q  184 ttc 186  Q
    |||    
T  5632354 ttc 5632352  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 5602090 - 5602170
Alignment:
Q  106 tgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagtatcgtagacaggttc 186  Q
    |||||| ||| ||||||||||| |||||||||||||||| ||| ||| ||| ||||||| | || ||||||| || |||||    
T  5602090 tgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgtaaacgggttc 5602170  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 5638530 - 5638450
Alignment:
Q  106 tgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagtatcgtagacaggttc 186  Q
    |||||| ||| ||||||||||| |||||||||||||||| ||| ||| ||| ||||||| | || ||||||| || |||||    
T  5638530 tgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgtaaacgggttc 5638450  T

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