View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_31 (Length: 282)
Name: NF17752_low_31
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 37989814 - 37990067
Alignment:
| Q |
13 |
tccatctccaaactctccaaactcaattatatctacatcatccaaaccaacatctccggggagatacctaacactctctcacagatcaaaacactagtaa |
112 |
Q |
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| T |
37989814 |
tccatctccaaactctccaaactcaattatatctacatcatccaaaccaacatctccggggagataccttacactctctcacagatcaaaacactagtaa |
37989913 |
T |
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| Q |
113 |
ccatctccttcaatagcaacaaactcaccggtcccctccccgcttcactctcaactatcccaaccctcgctggaatcgcattcaacgataaccaactctc |
212 |
Q |
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| T |
37989914 |
ccatctccttcaatagcaacaaactcaccggtcccctccccgcttcactctcaactatcccaaccctcgctggaatcgcattcaacgataaccaactcac |
37990013 |
T |
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| Q |
213 |
cggcacaataccagaatcttacggctcatttccgcctctctttaccgggttgct |
266 |
Q |
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| T |
37990014 |
cggcacaataccagaatcttacggctcatttccgcctctctttaccgggttgct |
37990067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 37993998 - 37994174
Alignment:
| Q |
13 |
tccatctccaaactctccaaactcaattatatctacatcatccaaaccaacatctccggggagatacctaacactctctcacagatcaaaacactagtaa |
112 |
Q |
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||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| |
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| T |
37993998 |
tccatatccaacctcaccaaactcaattccatctacatcatccaaaccaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaa |
37994097 |
T |
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| Q |
113 |
ccatctccttcaatagcaacaaactcaccggtcccctccccgcttcactctcaactatcccaaccctcgctggaatc |
189 |
Q |
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| T |
37994098 |
ccatcgacatcagcgacaacaaactcactggtcccctccccgcatcactctcaactctacctaacctcgctggaatc |
37994174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 38013577 - 38013683
Alignment:
| Q |
58 |
accaacatctccggggagatacctaacactctctcacagatcaaaacactagtaaccatctccttcaatagcaacaaactcaccggtcccctccccgctt |
157 |
Q |
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|||||||||||||| |||||||| ||||| ||||||||||||||||| || || |||| |||| | | ||||||||| || |||||||||||| || |
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| T |
38013577 |
accaacatctccggcgagataccaaacaccctctcacagatcaaaacgctcttacgcatcgacttctacaacaacaaactaactggtcccctccccacta |
38013676 |
T |
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| Q |
158 |
cactctc |
164 |
Q |
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||||||| |
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| T |
38013677 |
cactctc |
38013683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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