View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17752_low_32 (Length: 278)

Name: NF17752_low_32
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17752_low_32
NF17752_low_32
[»] chr2 (5 HSPs)
chr2 (16-264)||(30626634-30626882)
chr2 (156-264)||(30663700-30663808)
chr2 (156-264)||(30672380-30672488)
chr2 (16-119)||(30663587-30663690)
chr2 (16-119)||(30672267-30672370)
[»] chr5 (5 HSPs)
chr5 (32-264)||(35371108-35371340)
chr5 (48-264)||(35411282-35411498)
chr5 (48-264)||(35386636-35386852)
chr5 (54-206)||(35367494-35367646)
chr5 (48-238)||(35755467-35755657)
[»] chr1 (2 HSPs)
chr1 (48-264)||(10415027-10415243)
chr1 (54-221)||(10419956-10420123)
[»] chr7 (1 HSPs)
chr7 (48-264)||(29622581-29622797)
[»] chr8 (3 HSPs)
chr8 (48-234)||(15294354-15294540)
chr8 (48-234)||(15474723-15474909)
chr8 (143-215)||(13564967-13565039)
[»] chr3 (1 HSPs)
chr3 (48-264)||(1154298-1154514)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 30626634 - 30626882
Alignment:
Q  16 atggagcgggtggccaagtatcccctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgtt 115  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  30626634 atggagcgggtggccaagtatcacctcatggcgatatctacagctacgggattcttctcttagaaatgctcactggaaaaagaccaacaaatagcatgtt 30626733  T
Q  116 ttctggaagtcttagtctacatgcattctgtaagatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagat 215  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30626734 ttctggaagtctcagtctacatgcattctgtaagatgaaagttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagat 30626833  T
Q  216 gagacagggattgtggaaaacaagattaggaattgcttagtgatgtttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30626834 gagacagggattgtggaaaacaagattaggaattgcttagtgatgtttg 30626882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 30663700 - 30663808
Alignment:
Q  156 gttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttag 255  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30663700 gttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttag 30663799  T
Q  256 tgatgtttg 264  Q
    |||||||||    
T  30663800 tgatgtttg 30663808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 30672380 - 30672488
Alignment:
Q  156 gttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttag 255  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30672380 gttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttag 30672479  T
Q  256 tgatgtttg 264  Q
    |||||||||    
T  30672480 tgatgtttg 30672488  T

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Target: chr2; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 30663587 - 30663690
Alignment:
Q  16 atggagcgggtggccaagtatcccctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgtt 115  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||     
T  30663587 atggagcgggtggccaagtatcacctcatggtgatatctacagctacggaattcttctattagaaatgctcactggaaagagaccaacaaatagcatgtc 30663686  T
Q  116 ttct 119  Q
    ||||    
T  30663687 ttct 30663690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 30672267 - 30672370
Alignment:
Q  16 atggagcgggtggccaagtatcccctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgtt 115  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||     
T  30672267 atggagcgggtggccaagtatcacctcatggtgatatctacagctacggaattcttctattagaaatgctcactggaaagagaccaacaaatagcatgtc 30672366  T
Q  116 ttct 119  Q
    ||||    
T  30672367 ttct 30672370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 32 - 264
Target Start/End: Original strand, 35371108 - 35371340
Alignment:
Q  32 agtatcccctcatggcgatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttctggaagtcttagt 131  Q
    |||||| || ||||| |||||||| ||||  ||||||||||| ||||| |||||||| |||| |||||||||| ||| |||||||||||  ||||| |||    
T  35371108 agtatcaccacatggagatatctatagctttgggattcttctgttagagatgctcaccggaaagagaccaacagataacatgttttctgagagtctaagt 35371207  T
Q  132 ctacatgcattctgtaagatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtgg 231  Q
    || |||| |||||| || |||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  35371208 ctgcatgaattctgcaaaatgaaaattccagaaggaatccttgagatagtagattcacatttgcttttaccatttgctgaagatgatacagggattgtgg 35371307  T
Q  232 aaaacaagattaggaattgcttagtgatgtttg 264  Q
    ||||||||||||||||||| || ||||||||||    
T  35371308 aaaacaagattaggaattgtttggtgatgtttg 35371340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 48 - 264
Target Start/End: Original strand, 35411282 - 35411498
Alignment:
Q  48 gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttctggaagtcttagtctacatgcattctgta 147  Q
    |||||||||||||  |||||||||||| |||| ||| |||||| || |||||||||||||| ||  |||||||  ||||| |||||||||| |||||| |    
T  35411282 gatatctacagctttgggattcttctactagagatgttcactgcaaagagaccaacaaataacaacttttctgagagtctaagtctacatgaattctgca 35411381  T
Q  148 agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaa 247  Q
    | |||||| || ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35411382 aaatgaaaatttcagaaggaatccttgagatagtagattcacatttgcttttaccatttgctgaagatgagacagggattgtggaaaacaagattaggaa 35411481  T
Q  248 ttgcttagtgatgtttg 264  Q
    ||| || ||||||||||    
T  35411482 ttgtttggtgatgtttg 35411498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 264
Target Start/End: Original strand, 35386636 - 35386852
Alignment:
Q  48 gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttctggaagtcttagtctacatgcattctgta 147  Q
    |||||||||||||  |||||||||||| |||| ||| |||| |||| |||||||||||||| ||  |||||||  ||  | ||||| |||  |||||| |    
T  35386636 gatatctacagctttgggattcttctactagagatgttcaccggaaagagaccaacaaataacaacttttctgagagattaagtctgcataaattctgca 35386735  T
Q  148 agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaa 247  Q
    | || ||| ||||||||| |||| |||||||||||||||| || |||||||| |||||||||||||||||||  ||||||||||||||||||||||||||    
T  35386736 aaataaaaattccagaagcaatccttgagatagtagattctcaattgctttttccatttgctgaagatgagatggggattgtggaaaacaagattaggaa 35386835  T
Q  248 ttgcttagtgatgtttg 264  Q
    ||| || ||||||||||    
T  35386836 ttgtttggtgatgtttg 35386852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 35367494 - 35367646
Alignment:
Q  54 tacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttctggaagtcttagtctacatgcattctgtaagatga 153  Q
    |||||||  |||||||| || ||||| ||||||||||||| |||||||||| ||||||||||||  |  | |||||| || ||   ||||||||||||||    
T  35367494 tacagctttgggattctactgttagagatgctcactggaaagagaccaacagatagcatgttttgcgagaatcttagccttcacaaattctgtaagatga 35367593  T
Q  154 aagttccagaaggaatctttgagatagtagattcacatttgcttttgccattt 206  Q
    || |||| | || |||  |||||||||| ||||||||||||||| ||||||||    
T  35367594 aaattcccgtagaaattcttgagatagtggattcacatttgcttatgccattt 35367646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 35755467 - 35755657
Alignment:
Q  48 gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttctggaagtcttagtctacatgcattctgta 147  Q
    ||||| |||||||| |||||||| || || |||||||| || |||| |||||||||| ||| |||||||| ||  | ||| | ||||||   ||||||||    
T  35755467 gatatttacagctatgggattctgctgttggaaatgcttaccggaaagagaccaacagataacatgttttatgagaatctaactctacacaaattctgta 35755566  T
Q  148 agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaa 238  Q
    |||||| | |||| |||| |||  ||||| | |||||||| | ||  ||| | ||||| | ||||||| ||||| |  |||||||||||||    
T  35755567 agatgagaattcctgaagaaattcttgaggttgtagattcccgttgccttattccattggttgaagatcagacacgagttgtggaaaacaa 35755657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 10415243 - 10415027
Alignment:
Q  48 gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttctggaagtcttagtctacatgcattctgta 147  Q
    |||||||| ||||  ||||||||||| ||||| ||||||||||||| |||||||||||||| |||||||||||  ||||  |||||||||| |||||| |    
T  10415243 gatatctatagctttgggattcttctgttagagatgctcactggaaagagaccaacaaataacatgttttctgagagtcaaagtctacatgaattctgca 10415144  T
Q  148 agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaa 247  Q
    | |||||| |||||||||||||| | ||||||||||||||||| || |||||||||||||| |||| |||||| |||||||||||||| ||||||| |||    
T  10415143 aaatgaaaattccagaaggaatcctcgagatagtagattcacaattacttttgccatttgccgaagttgagacggggattgtggaaaataagattaagaa 10415044  T
Q  248 ttgcttagtgatgtttg 264  Q
     || || ||||||||||    
T  10415043 gtgtttggtgatgtttg 10415027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 10420123 - 10419956
Alignment:
Q  54 tacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgtttt-ctggaagtcttagtctacatgcattctgtaagatg 152  Q
    |||||||  ||||||||  | ||||| ||||||||||||| |||||||||| ||| |||||||  |  ||| |||||| || ||   |||||||||||||    
T  10420123 tacagctttgggattctcttgttagagatgctcactggaaagagaccaacagataacatgtttagccagaa-tcttagccttcacaaattctgtaagatg 10420025  T
Q  153 aaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagaca 221  Q
    ||| |||| | || |||  |||||||||| ||||||||||||||| |||||||| || ||||| |||||    
T  10420024 aaaattcctgtagaaattcttgagatagtggattcacatttgcttatgccatttcctaaagatcagaca 10419956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 29622797 - 29622581
Alignment:
Q  48 gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttctggaagtcttagtctacatgcattctgta 147  Q
    |||||||||||||  || |||||||| ||||| ||||||||||||| ||||||| || ||| |||||||| ||  | | | || |||||   ||||||||    
T  29622797 gatatctacagctttggcattcttctgttagagatgctcactggaaagagaccagcagataacatgttttgtgagaatttaagcctacacaaattctgta 29622698  T
Q  148 agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaa 247  Q
    |||||||  |||||||||||||  |||||||||| ||||| | ||| ||| | |||||||||||||||  ||||||||||||||||||||||||||||||    
T  29622697 agatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaacaagattaggaa 29622598  T
Q  248 ttgcttagtgatgtttg 264  Q
    ||| || ||||||||||    
T  29622597 ttgtttggtgatgtttg 29622581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 234
Target Start/End: Original strand, 15294354 - 15294540
Alignment:
Q  48 gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttctggaagtcttagtctacatgcattctgta 147  Q
    |||||||||||||| |||||||| || || ||||||||||| |||| ||||||||||||||||||||| | ||  | ||| ||||||||   ||| ||||    
T  15294354 gatatctacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgttctgtgagaatctaagtctacagaaattttgta 15294453  T
Q  148 agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaa 234  Q
    |||||||| |||||||||||||  |||||||||| | ||| |||| |||| | ||||| | ||||||| |||||  | |||||||||    
T  15294454 agatgaaaattccagaaggaattcttgagatagtgggttctcattggcttattccattggttgaagatcagacaaaggttgtggaaa 15294540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 234
Target Start/End: Original strand, 15474723 - 15474909
Alignment:
Q  48 gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttctggaagtcttagtctacatgcattctgta 147  Q
    |||||||||||||| |||||||| || || ||||||||||| |||| ||||||||||||||||||||| | ||  | ||| ||||||||   ||| ||||    
T  15474723 gatatctacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgttctgtgagaatctaagtctacagaaattttgta 15474822  T
Q  148 agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaa 234  Q
    |||||||| |||||||||||||  |||||||||| | ||| |||| |||| | ||||| | ||||||| |||||  | |||||||||    
T  15474823 agatgaaaattccagaaggaattcttgagatagtgggttctcattggcttattccattggttgaagatcagacaaaggttgtggaaa 15474909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 13564967 - 13565039
Alignment:
Q  143 ctgtaagatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagat 215  Q
    ||||||||||||| |||||||||||||| ||| |||||| |||  || ||||||| |||||||| | ||||||    
T  13564967 ctgtaagatgaaaattccagaaggaatccttgcgatagtggatcaacgtttgcttatgccatttacggaagat 13565039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 264
Target Start/End: Original strand, 1154298 - 1154514
Alignment:
Q  48 gatatctacagctacgggattcttctattagaaatgctcactggaaggagaccaacaaatagcatgttttctggaagtcttagtctacatgcattctgta 147  Q
    |||||||||||||  ||||||||||| ||||| |||||||| |||| ||||||||| ||||| || |||| ||  | | | || ||| | |  || ||||    
T  1154298 gatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagcctatacgagttttgta 1154397  T
Q  148 agatgaaagttccagaaggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaa 247  Q
    | |||||| || | ||||||||| |||||||||| ||   || ||||||| |||| ||||  |||||| ||||||  |||||||||||||||||||  ||    
T  1154398 aaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgccgtttgtcgaagatcagacagaaattgtggaaaacaagattaaaaa 1154497  T
Q  248 ttgcttagtgatgtttg 264  Q
     || || ||||||||||    
T  1154498 gtgtttggtgatgtttg 1154514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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