View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17752_low_33 (Length: 274)

Name: NF17752_low_33
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17752_low_33
NF17752_low_33
[»] chr7 (6 HSPs)
chr7 (1-98)||(32695370-32695467)
chr7 (161-256)||(32679148-32679243)
chr7 (158-256)||(32695211-32695310)
chr7 (158-242)||(32686228-32686312)
chr7 (1-95)||(32679310-32679404)
chr7 (7-85)||(32686370-32686448)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 32695467 - 32695370
Alignment:
Q  1 attgcggttaaaccggcaatgatttgcttcaacaattttgcagttttgctcttcatgtttgtcattgtagtaataattgatgactctagagacttagc 98  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32695467 attgcggttaaaccggcaatgatttgcttcaacaattttgctgttttgctcttcatgtttgtcattgtagtaataattgatgactctagagacttagc 32695370  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 161 - 256
Target Start/End: Complemental strand, 32679243 - 32679148
Alignment:
Q  161 ttttggtattgtttaggtttgagattgagagagaggtgatagtttgaagagaggattgttattgtacaagctttgtactttgttacgaacgagtac 256  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  32679243 ttttggtaatgtttaggtttgagattgagagagaggtgatagtttgaagagaggattgttattgtacaagctttgtactttggcacgaacgagtac 32679148  T

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Target: chr7; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 158 - 256
Target Start/End: Complemental strand, 32695310 - 32695211
Alignment:
Q  158 caattttggtattgtttaggtttgagattgagagagaggtgatagtttgaagagaggatt-gttattgtacaagctttgtactttgttacgaacgagtac 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  32695310 caattttggtattgtttaggtttgagattgagagagaggtgatagtttgaagagaggattggttattgtacaagctttgtactttggcacgaacgagtac 32695211  T

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Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 32686312 - 32686228
Alignment:
Q  158 caattttggtattgtttaggtttgagattgagagagaggtgatagtttgaagagaggattgttattgtacaagctttgtactttg 242  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32686312 caattttgggaatgtttaggtttgagattgatagagaggtgatagtttgaagagaggattgttattgtacaagctttgtactttg 32686228  T

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Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 32679404 - 32679310
Alignment:
Q  1 attgcggttaaaccggcaatgatttgcttcaacaattttgcagttttgctcttcatgtttgtcattgtagtaataattgatgactctagagactt 95  Q
    |||| ||||||| |||||||||||||||| ||||| ||||| |||||| ||||||||||  ||||||||||||  ||||||||||||||||||||    
T  32679404 attgaggttaaatcggcaatgatttgctttaacaaatttgctgttttgttcttcatgttgctcattgtagtaactattgatgactctagagactt 32679310  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 32686448 - 32686370
Alignment:
Q  7 gttaaaccggcaatgatttgcttcaacaattttgcagttttgctcttcatgtttgtcattgtagtaataattgatgact 85  Q
    |||||||| || || |||||||||  ||||||||| |||||| || |||||||  ||||||||||||||||||||||||    
T  32686448 gttaaaccagctataatttgcttctgcaattttgctgttttgttcatcatgttgctcattgtagtaataattgatgact 32686370  T

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