View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_39 (Length: 237)
Name: NF17752_low_39
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 1552571 - 1552771
Alignment:
| Q |
22 |
tttgtttaatagttctgtgactcgaattcactttttaaaatgaataaataagatgcacgagattcgaactccaacgctatatataacaatacattatctc |
121 |
Q |
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| T |
1552571 |
tttgtttaatagtcttgtggctcgaattcactttttaaaatgaataaataaaatgcacgaggttcgaactccaacgctacatataacaatagattatctg |
1552670 |
T |
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| Q |
122 |
tatcatctgagttatgttcatggggacggtgtccaaacaagttactctttgaagagatatannnnnnngttgcttttgttag--atatatatgtttaaaa |
219 |
Q |
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| T |
1552671 |
taccatctgagttatgctcattgagacggtgtccaaataagttactctttgaagagatat-tttttttgttgcttttgttagatatatatatgtttaaaa |
1552769 |
T |
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| Q |
220 |
aa |
221 |
Q |
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|| |
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| T |
1552770 |
aa |
1552771 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 924385 - 924432
Alignment:
| Q |
101 |
tatataacaatacattatctctatcatctgagttatgttcatggggac |
148 |
Q |
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| T |
924385 |
tatataacaatacattatctctgtcaactgagatatgttcacggggac |
924432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 5167180 - 5167152
Alignment:
| Q |
98 |
ctatatataacaatacattatctctatca |
126 |
Q |
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| T |
5167180 |
ctatatataacaatacattatctctatca |
5167152 |
T |
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