View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_4 (Length: 580)
Name: NF17752_low_4
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 51199167 - 51198777
Alignment:
| Q |
18 |
atataaggaaataaagtgcatgtatttgggccaaattgtaaattctcagatagatgaagaatgtaaatttagatattataagctcgagtgaagaaaaagg |
117 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
51199167 |
atataaggaaaaaaagtgcatgtatttgggccagattgtaaattctcagatagatgaagaatgtaaatttagaaattataagctcgagtgaagaaaa-gg |
51199069 |
T |
|
| Q |
118 |
aacaaaaaacttacatggagccagtcaatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctataaccatttttccaccaaacca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51199068 |
aacaaaaaacttacatggagccagtcaatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctattaccatttttccaccaaacca |
51198969 |
T |
|
| Q |
218 |
tactgctaaaccataactagcaataacaacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctcttttactacagttttgtaagcatcaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51198968 |
tactgctaaaccataactagcaataacaacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctcttttactacagttttgtaagcatcaatt |
51198869 |
T |
|
| Q |
318 |
aaggactgatcatatttagctatggcctgtttctctccggtgaacgacgcaacctgcatcagaaaaatagaagtcatctaaaaatctgcaat |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51198868 |
aaggactgatcatatttagctatggcctgtttctctccggtgaacgatgcaacctgcatcagaaaaatagaagtcatctaaaaatctgcaat |
51198777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 433 - 560
Target Start/End: Complemental strand, 51198756 - 51198629
Alignment:
| Q |
433 |
agttctttctggaagtttgcatacagttctaatagagcctattgtctgttctacaacagttgcagctttagaataagctgcttgtccactggatgatgct |
532 |
Q |
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| T |
51198756 |
agttctttctggaagtttgcatacagttctaatagagcctattgtctgttctacaacagttgcagctttagaataagctgcttgtccactggatgatgct |
51198657 |
T |
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| Q |
533 |
tttgaaataaccatactcatcattgcac |
560 |
Q |
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| T |
51198656 |
tttgaaataaccatactcatcattgcac |
51198629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 107 - 372
Target Start/End: Complemental strand, 51156280 - 51156015
Alignment:
| Q |
107 |
gaagaaaaaggaacaaaaaacttacatggagccagtcaatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctataaccattttt |
206 |
Q |
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||||||||| |||| ||| ||||||| || |||||||||||||||||||||| ||||| ||| ||||| || ||||||||||||||||| | || ||| |
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| T |
51156280 |
gaagaaaaaacaacacaaatcttacattgaaccagtcaatacagcaaaaattacagtcataacatccccacctgtatatcctttctctattatcaatttc |
51156181 |
T |
|
| Q |
207 |
ccaccaaaccatactgctaaaccataactagcaataacaacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctcttttactacagttttgt |
306 |
Q |
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|||||| |||| || || ||||||||||| | |||| |||||| |||||| | ||||||| | |||||| ||||||||||||| ||| ||| || | |
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| T |
51156180 |
ccaccataccaaacagccaaaccataactggagataaaaacaaaaaagagtgcagcaaaccccacaccagatgctagtgcctcttgcactgaagtgttat |
51156081 |
T |
|
| Q |
307 |
aagcatcaattaaggactgatcatatttagctatggcctgtttctctccggtgaacgacgcaacct |
372 |
Q |
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|| | | ||||||||||||| |||||||| ||| || |||||||| || ||||| || ||||||| |
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| T |
51156080 |
aaaccttgattaaggactgattatatttagttatagcttgtttctccccagtgaatgatgcaacct |
51156015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 142 - 376
Target Start/End: Complemental strand, 51145105 - 51144871
Alignment:
| Q |
142 |
tcaatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctataaccatttttccaccaaaccatactgctaaaccataactagca-a |
240 |
Q |
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|||||||||||||||||| ||||| ||| |||||||| || ||||||||||| || | |||||| |||||||||||||| || ||||||||||| ||| | |
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| T |
51145105 |
tcaatacagcaaaaattacagtcataacgtcccctcctgtgtatcctttctcaattatcattttcccaccaaaccatacagccaaaccataact-gcaga |
51145007 |
T |
|
| Q |
241 |
taacaacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctcttttactacagttttgtaagcatcaattaaggactgatcatatttagctat |
340 |
Q |
| |
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||| |||||| |||||| ||||||||| | |||||| || |||||||||| ||| |||| ||||| | | |||||||| ||| ||| |||||| | |
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| T |
51145006 |
taaaaacaaaaaagagtgtaccaaacccaacaccagatgccagtgcctcttgcactgcagtcttgtagactttgattaaggatcgattataattagctgt |
51144907 |
T |
|
| Q |
341 |
ggcctgtttctctccggtgaacgacgcaacctgcat |
376 |
Q |
| |
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|| |||||||| ||||||||||| ||||||||||| |
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| T |
51144906 |
agcttgtttctccccggtgaacgatgcaacctgcat |
51144871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 452 - 555
Target Start/End: Complemental strand, 51144794 - 51144691
Alignment:
| Q |
452 |
catacagttctaatagagcctattgtctgttctacaacagttgcagctttagaataagctgcttgtccactggatgatgcttttgaaataaccatactca |
551 |
Q |
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|||||||||| ||| || ||||||||||| ||||| ||| ||| | |||||||||||||||||||||| | ||||||||||||| ||||||||||||| |
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| T |
51144794 |
catacagttcgaatggaacctattgtctgctctactacacctgctgatttagaataagctgcttgtccagttgatgatgcttttgcaataaccatactcg |
51144695 |
T |
|
| Q |
552 |
tcat |
555 |
Q |
| |
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|||| |
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| T |
51144694 |
tcat |
51144691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 127 - 373
Target Start/End: Original strand, 29937828 - 29938074
Alignment:
| Q |
127 |
cttacatggagccagtcaatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctataaccatttttccaccaaaccatactgctaa |
226 |
Q |
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||||||| || |||||||||| ||||| | || ||||| ||| || ||||| ||||||||||||||||| | || ||| |||||||||||||| || || |
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| T |
29937828 |
cttacattgaaccagtcaatattgcaaatagtacagtcataacatcgcctcctgtatatcctttctctattatcaatttcccaccaaaccatacagccaa |
29937927 |
T |
|
| Q |
227 |
accataactagcaataacaacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctcttttactacagttttgtaagcatcaattaaggactga |
326 |
Q |
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|| ||||| | |||| |||||| ||| || | ||||||| | |||||| ||||||||||||| ||| ||| |||||| | | |||||||| ||| |
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| T |
29937928 |
actgtaactggagataaaaacaaaaaagattgtagcaaaccccacaccagatgctagtgcctcttgcactgtagtattgtaaaccttgattaaggaatga |
29938027 |
T |
|
| Q |
327 |
tcatatttagctatggcctgtttctctccggtgaacgacgcaacctg |
373 |
Q |
| |
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| |||||| | | | || |||||||| || ||||| || |||||||| |
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|
| T |
29938028 |
ttatattttgttgtagcttgtttctccccagtgaatgatgcaacctg |
29938074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 470 - 560
Target Start/End: Complemental strand, 51155915 - 51155825
Alignment:
| Q |
470 |
cctattgtctgttctacaacagttgcagctttagaataagctgcttgtccactggatgatgcttttgaaataaccatactcatcattgcac |
560 |
Q |
| |
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||||||||||| || || ||| |||| | ||||||||||||||| |||||| | ||||||||||||| |||||||| ||||||||| |||| |
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| T |
51155915 |
cctattgtctgctcaactacacttgctgatttagaataagctgcctgtccagttgatgatgcttttgcaataaccaaactcatcatagcac |
51155825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 550
Target Start/End: Original strand, 29938151 - 29938251
Alignment:
| Q |
450 |
tgcatacagttctaatagagcctattgtctgttctacaacagttgcagctttagaataagctgcttgtccactggatgatgcttttgaaataaccatact |
549 |
Q |
| |
|
|||||||||||| || || || |||||||| ||||| | | |||| | || ||||||||||||||||||| | ||||||||||||| ||||||| |||| |
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|
| T |
29938151 |
tgcatacagttcggatggaaccaattgtctgctctactagacttgctgattcagaataagctgcttgtccagttgatgatgcttttgcaataaccttact |
29938250 |
T |
|
| Q |
550 |
c |
550 |
Q |
| |
|
| |
|
|
| T |
29938251 |
c |
29938251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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