View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_41 (Length: 227)
Name: NF17752_low_41
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 48225226 - 48225036
Alignment:
| Q |
14 |
agcacagatggtgaaatgggcacatatcctttggaattcgatactccagctactaaccaagtcactagcacaacacaacacattccagtgtattgggaag |
113 |
Q |
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| T |
48225226 |
agcacaaatggtgaaatgggcacat--cctttggaattcgatactccaactactaaccaagtcactagcacaacaca-----ttccagtgtattgggaag |
48225134 |
T |
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| Q |
114 |
tggcaaacaaaacaaaaacagtcaaagacagattcacaaatgaatgaatgtgtataaatcttgttttaattttttatttggttagtgatcagagaaag |
211 |
Q |
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| T |
48225133 |
tggcaaacaaaacaaaaacagtcaaagacagattcacaaatgaatgaatgtgtataaatcttgttttaattttttatttggttagtgatcagagaaag |
48225036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 211
Target Start/End: Complemental strand, 54528658 - 54528479
Alignment:
| Q |
42 |
ctttggaattcgatactccagctactaaccaagtcactagcacaacacaaca-cattccagtgtattgggaagtggcaaacaaaacaaaaacagtcaaag |
140 |
Q |
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| T |
54528658 |
ctttgaaatttgatactccaactacta-ccaagtcaccagcacaacacaacaacattccagtgtgttaacaagtggcaaacaaaataaagtcagtcaaat |
54528560 |
T |
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| Q |
141 |
acagattca----------caaatgaatgaatgtgtataaatcttgttttaattttttatttggttagtgatcagagaaag |
211 |
Q |
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| T |
54528559 |
ttagaatcagcccttatcacaaatgaatgaatgtgcacaaatattattttaattttttatttggttagtgatgagagaaag |
54528479 |
T |
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