View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_5 (Length: 574)
Name: NF17752_low_5
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 28 - 557
Target Start/End: Original strand, 22191491 - 22192030
Alignment:
| Q |
28 |
aaaaataaaaccatgataacaa---gccaaaaccaactgtcagaccatattgattttctgcagtcaatgaataccgtactaatgcctcggacattgtgat |
124 |
Q |
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| T |
22191491 |
aaaaaaaaaaccatgataacaacaagccaaaaccaactgtcggaccatattaattttcttcagtcaatgaataccgtactaatgcctcggacattgtgat |
22191590 |
T |
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| Q |
125 |
atagtcaagcctagaacattggtgaaaac----gaatccttgtagcattgtnnnnnnn-ccttacgatcagactcgatttacacattagagaa-ccaaat |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
22191591 |
atagtcaagcctagaacattggtgaaaaccctcgaatccttgtagaattgtaaaaaaaaccttacgatcagactcgatttacacattagagaaaccaaat |
22191690 |
T |
|
| Q |
219 |
tcaagagctagttgaagagagctgagtatagcatgtggcacgccttcagccatgccgatgcgggaggttgtccatgatgtccaaacacaaataaattcat |
318 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22191691 |
tcaagagctagttgaagagagctgagtatagaatgtggcacgccttcagccatgtcgatgcgggaggttgtccatgatgtccaaacacaaataaattcat |
22191790 |
T |
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| Q |
319 |
taggctgcctctaaaacatattccatttccagttttctgttattgtgttgcaagatgtgaaaaacagactatgatagttatctccacgtggaaggttgta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22191791 |
taggctgcctctaaaacatattccatttccagttttctgttattgtgttgcaagatgtgaaaaacagactatgatagttatctccacgtggaaggttgta |
22191890 |
T |
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| Q |
419 |
ccatcagtataaatttgaagcaaattgactacttttattttcttaattaaactggaccaaaggctaggctc-nnnnnnngattatacagaaatcaaacaa |
517 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22191891 |
ccatcagtataaatttgaaccaaattgactacttttattttcttaattaaactggaccaaaggctaggctcaaaagaaagattatacagaaatcaaacaa |
22191990 |
T |
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| Q |
518 |
ttggagtgaaaacttccataaaaacatttgagatgggaaa |
557 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
22191991 |
ttggagtgaaaacttccataaaaacatttgagatgggaaa |
22192030 |
T |
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