View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_6 (Length: 550)
Name: NF17752_low_6
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_6 |
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| [»] scaffold0952 (1 HSPs) |
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| [»] scaffold0717 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 10 - 165
Target Start/End: Complemental strand, 40348766 - 40348611
Alignment:
| Q |
10 |
ataatactgttgtagctcgtattcgtgcaaaaaacaaaagatttctgcacaaagcaataatcttgcatcaatatcaatgataattaatcttattttcatc |
109 |
Q |
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| T |
40348766 |
ataatactgttgtagctcgtattcgtgcaaaaaacaaaagattcctgcacaaagcaataatcttatatcaatatcaatgataattaatattattttcatc |
40348667 |
T |
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| Q |
110 |
aaaccattttgattgaatttttgcaaacaaatgtccctgcttataaacttctcaat |
165 |
Q |
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| T |
40348666 |
aaaccattttgattgaatttttgcaaacaaatgtccctgcttataaacttctcaat |
40348611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 338 - 433
Target Start/End: Complemental strand, 40348467 - 40348372
Alignment:
| Q |
338 |
gagatatattaactaaactactcgaggcacaagttgtgtcaaggatataaaatacaactataaatcacaatgcaaaaacttaataccaacacaaaa |
433 |
Q |
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| T |
40348467 |
gagatatattaactaaactactcgaggcacaagttgtgtcaaggatataaaatacaactataaatcacaatgcaaaaacttaataccaacacaaaa |
40348372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 432 - 535
Target Start/End: Complemental strand, 40346972 - 40346869
Alignment:
| Q |
432 |
aagtcgttagctatttctctaatgtatcctcttaatcgattatatatttcaatttttcaattatattttcacttgtcgttcatcatatattttcgtgttg |
531 |
Q |
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| T |
40346972 |
aagtcgttagctattcctctaatgtatcctcttaattgattatatattttaatttttcaattatattttcacttgtcgttcattatatatttttgtgttc |
40346873 |
T |
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| Q |
532 |
gaca |
535 |
Q |
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|||| |
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| T |
40346872 |
gaca |
40346869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 40348563 - 40348519
Alignment:
| Q |
212 |
gttctagcttaagcatattcaattttataaaatataatttcatcc |
256 |
Q |
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| T |
40348563 |
gttctagcttaagcgtattcaagtttataaaatataatttcatcc |
40348519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 496
Target Start/End: Complemental strand, 20534816 - 20534756
Alignment:
| Q |
437 |
gttagctatttctctaatgtatcctcttaatcgattatata-tttcaatttttcaattata |
496 |
Q |
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|||| ||||| |||||||| |||||||||||||||| |||| ||||||| |||||| |||| |
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| T |
20534816 |
gttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaactata |
20534756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0952 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 496
Target Start/End: Original strand, 2894 - 2957
Alignment:
| Q |
434 |
gtcgttagctatttctctaatgtatcctcttaatcgattatata-tttcaatttttcaattata |
496 |
Q |
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||||||| ||||| |||||||| |||||||||||||||| |||| ||||||| ||||||||||| |
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| T |
2894 |
gtcgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaattata |
2957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 496
Target Start/End: Complemental strand, 35917796 - 35917734
Alignment:
| Q |
435 |
tcgttagctatttctctaatgtatcctcttaatcgattatata-tttcaatttttcaattata |
496 |
Q |
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|||||||||| || ||||||||||||||| ||||||||||||| ||||||| ||| ||||||| |
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| T |
35917796 |
tcgttagctaattttctaatgtatcctctaaatcgattatatactttcaatattttaattata |
35917734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0717 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0717
Description:
Target: scaffold0717; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 496
Target Start/End: Complemental strand, 2469 - 2406
Alignment:
| Q |
434 |
gtcgttagctatttctctaatgtatcctcttaatcgattatata-tttcaatttttcaattata |
496 |
Q |
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||||||| ||||| |||||||| |||||||||||||||| |||| ||||||| |||||| |||| |
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| T |
2469 |
gtcgttaactattcctctaatgaatcctcttaatcgattgtatactttcaatgtttcaactata |
2406 |
T |
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