View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17752_low_8 (Length: 512)

Name: NF17752_low_8
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17752_low_8
NF17752_low_8
[»] chr7 (1 HSPs)
chr7 (1-498)||(2310952-2311448)
[»] scaffold0024 (2 HSPs)
scaffold0024 (7-64)||(79567-79624)
scaffold0024 (10-64)||(72506-72560)
[»] chr4 (10 HSPs)
chr4 (1-65)||(30220274-30220338)
chr4 (1-65)||(30271283-30271347)
chr4 (1-65)||(30280842-30280906)
chr4 (1-65)||(30304350-30304414)
chr4 (1-68)||(30264389-30264456)
chr4 (1-68)||(30287732-30287799)
chr4 (1-73)||(30032341-30032413)
chr4 (1-73)||(30048587-30048659)
chr4 (1-73)||(30062928-30063000)
chr4 (1-73)||(30228726-30228798)


Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 2311448 - 2310952
Alignment:
Q  1 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattattgtgcctaatgaattttttgtagggtagttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311448 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattattgtgcctaatgaattttttgtagggtagttta 2311349  T
Q  101 ctatgtgaacttcccataatggtttcccttgaggtaatggctcaattgctatggttgacaaataatcttgaaaagatttctcatagaattccacnnnnnn 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||          
T  2311348 ctatgtgaacttcccataatggtttcccttgaggtaatggctcaattgctatggttgacaaataatcttgaaaagatttgtcatagaattccactttttt 2311249  T
Q  201 nccttttgcaaatattggttttttcacatggtcttttaagttcacatcaacttgcttccatcttttatcttcatttttatcttgtacctgttcacacata 300  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311248 tccttttgaaaatattggttttttcacatggtcttttaagttcacatcaacttgcttccatcttttatcttcatttttatcttgtacctgttcacacata 2311149  T
Q  301 tttgaacaattctagtc-aggnnnnnnncaatataaatgatggaatttaatatattttaacaagagtaaaataagatgtgatcgatatttaaaaaactaa 399  Q
    |||||||||| |||||| ||        | |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2311148 tttgaacaatgctagtcaagaaaaaaaaccatataaatgatggtgtttaatatattttaacaagagtaaaataagatgtgatcgatatttaaaaaactaa 2311049  T
Q  400 accgaatcgaacatttcaactgtttgaagtgtgaaccgaaacggtttgtggttcggtttgagcaatatatttagatttcattttcttctcattcaagtg 498  Q
    ||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||    
T  2311048 accgaatcggacatttcaaccgtttgatgtgtgaaccgaaacggtttgtggttcggtttgagca--atatttagatttcattttcttttcattcaagtg 2310952  T

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Target: scaffold0024 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 79567 - 79624
Alignment:
Q  7 gaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaata 64  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  79567 gaaagaagtgcacccattagagagtaaccatctccaagtgcatgatgaagtttgaata 79624  T

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Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 72506 - 72560
Alignment:
Q  10 agaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaata 64  Q
    ||||| || ||||||||||| |||||||||||||||||||| |||||||||||||    
T  72506 agaagagctcccattagagagtaaccatctccaagtgcatgatgaagtttgaata 72560  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 30220338 - 30220274
Alignment:
Q  1 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatat 65  Q
    |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  30220338 agacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatat 30220274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30271283 - 30271347
Alignment:
Q  1 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatat 65  Q
    |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  30271283 agacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatat 30271347  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 30280906 - 30280842
Alignment:
Q  1 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatat 65  Q
    |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  30280906 agacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatat 30280842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30304350 - 30304414
Alignment:
Q  1 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatat 65  Q
    |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  30304350 agacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatat 30304414  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30264389 - 30264456
Alignment:
Q  1 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattat 68  Q
    |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||||||    
T  30264389 agacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattat 30264456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30287799 - 30287732
Alignment:
Q  1 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattat 68  Q
    |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||||||    
T  30287799 agacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattat 30287732  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30032341 - 30032413
Alignment:
Q  1 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattattgtgc 73  Q
    |||||||||||||| |||||||| ||||| ||||| || ||||||||||| ||||||||||||||||| ||||    
T  30032341 agacaagaaagaagagcacccatgagagagtaaccgtcaccaagtgcatgatgaagtttgaatattatggtgc 30032413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30048587 - 30048659
Alignment:
Q  1 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattattgtgc 73  Q
    |||||||||||||| |||||||| ||||| |||||||| |||||| |||| ||||||||||||||||| ||||    
T  30048587 agacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttgaatattatggtgc 30048659  T

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Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30062928 - 30063000
Alignment:
Q  1 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattattgtgc 73  Q
    |||||||||||||| |||||||| ||||| |||||||| |||||| |||| ||||||||||||||||| ||||    
T  30062928 agacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttgaatattatggtgc 30063000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30228726 - 30228798
Alignment:
Q  1 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattattgtgc 73  Q
    |||||||||||||| |||| ||| ||||| |||||||| ||||||||||| | ||||||||||||||| ||||    
T  30228726 agacaagaaagaagagcactcatgagagagtaaccatcaccaagtgcatgattaagtttgaatattatggtgc 30228798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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