View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_9 (Length: 511)
Name: NF17752_low_9
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 145 - 492
Target Start/End: Original strand, 41705065 - 41705410
Alignment:
| Q |
145 |
aacctgtgcctcactcttctttttcccctttataaacaacaaacaaaacactctcattctctcactcacatcatcacacaccactccatctacaaattca |
244 |
Q |
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| T |
41705065 |
aacctgtgcctcactcttctttttcccctttataaacaacaaacaaaacactctcattctc--actcatatcatcacacaccactccatctacaaattca |
41705162 |
T |
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| Q |
245 |
aaaactcttctcctctctctgtattcaagttccaacacnnnnnnncaaatac--tgtttaaccaaatggcttctcccctgttatttctcctcatcatcac |
342 |
Q |
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| T |
41705163 |
aaaactcttctcctctct--gtattcaagttccaacacaaaaaaacaaataccctgtttaaccaaatggcttctcccctgttatttctcctcctcatcac |
41705260 |
T |
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| Q |
343 |
actcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccataatagaattcaacacaacccaccacctccttaaatcc |
442 |
Q |
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| T |
41705261 |
actcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccatgatagaattcaacacaacccaccacctccttaaatcc |
41705360 |
T |
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| Q |
443 |
acctcaactcactcattatcacgcttccaccgccataaacaccaccacca |
492 |
Q |
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| T |
41705361 |
acctcaactcactcattatcacgcttccaccgccataaacaccaccacca |
41705410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 36722562 - 36722445
Alignment:
| Q |
19 |
gttggtgctgctggtgctcgtgctggcgaaaaatttcatagtggctgtgattcatctacatctgctgttgatgatgacgaaaattttgttattctcagtt |
118 |
Q |
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| T |
36722562 |
gttggtgctgctgctgctcgtgctggcaaaaaatttcatagtggctgtgattcatctacatctgctgttgatgatgacgaaaattgtgttattctcagtt |
36722463 |
T |
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| Q |
119 |
cttttactgcttcagtga |
136 |
Q |
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| T |
36722462 |
cttctactgcttcagtga |
36722445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 36709690 - 36709573
Alignment:
| Q |
19 |
gttggtgctgctggtgctcgtgctggcgaaaaatttcatagtggctgtgattcatctacatctgctgttgatgatgacgaaaattttgttattctcagtt |
118 |
Q |
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||||||| |||||||||| ||||||| ||| | ||||||||||| |||||||||||| |||||| |||||||||||||||| ||| |||||||||||||| |
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| T |
36709690 |
gttggtggtgctggtgctggtgctggtgaagattttcatagtggttgtgattcatcttcatctgttgttgatgatgacgaagattgtgttattctcagtt |
36709591 |
T |
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| Q |
119 |
cttttactgcttcagtga |
136 |
Q |
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||| | | |||||||||| |
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| T |
36709590 |
cttctgccgcttcagtga |
36709573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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