View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17753_high_4 (Length: 386)
Name: NF17753_high_4
Description: NF17753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17753_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 99 - 331
Target Start/End: Original strand, 868283 - 868514
Alignment:
| Q |
99 |
gcatgcatcaatatattcgggggaagctagctcgttgcatgtacgaccttgatcaacaactagaatatggaacaatagcatgtcgcacacaaatggagtt |
198 |
Q |
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| T |
868283 |
gcatgcatcaatatattcgggggaagctagctcgttgcatatacgaccttgatcaacaactagaatatggaacaatagcatgtcgcacacaaatggagtt |
868382 |
T |
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| Q |
199 |
gcaacaaacgactcccacaattgatattttgtgtcactgggctcaacgaggcttaaaatttcaaaattgtaggactttgaaatccacaatgccataattt |
298 |
Q |
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| T |
868383 |
gcaacaa-cgactcccacaattgatattttgtgtcactgggctcaacgaggcttaaaatttcaaaattgtaggactttgaaatccacaatgccataattt |
868481 |
T |
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| Q |
299 |
tgccaacggtgttagtggattttcgtttagtta |
331 |
Q |
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| T |
868482 |
tgccaacggtgttagtggattttcgtttagtta |
868514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 868210 - 868286
Alignment:
| Q |
1 |
atggacatcatcacctacatgtttcatctgatccacc----aagttaacaaaaactggttcaattcagacacttgcat |
74 |
Q |
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| T |
868210 |
atggacaccatcacctacatgtttcatctgatccaccaattaagttaa-aaaaactggttcaaatcagacacttgcat |
868286 |
T |
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