View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17753_low_1 (Length: 677)
Name: NF17753_low_1
Description: NF17753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17753_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 12 - 661
Target Start/End: Complemental strand, 19177811 - 19177163
Alignment:
| Q |
12 |
tcatcagatagataagttggaatctttactagttaaacacattgtcacaaacacgaccattttcaaatgaaatattgcagaaaatatgtaggaccgacat |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19177811 |
tcatcagatagataagttggaatctttactagttaaacacattgtcacaaacacggccattttcaaatgaaatattgcagaaaatatgtaggacccacat |
19177712 |
T |
|
| Q |
112 |
gttgaacactgacacattagtttacatttaattacttctattttctcaaaattgttactagtgtcgacgtgtcagtgtctttgctagtgctttatatact |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19177711 |
gttgaacactgacacattagtttacatttaattacttctattttctcaaaattgttagtagtgtcgacgtgtcagtgtctttgctagtgctttatatact |
19177612 |
T |
|
| Q |
212 |
tcctaaaagaaatagatttcaatttgttttccaaatgtaatatagtaaattagtgaaggtcaaaatgtaataagagtgcaagactagtatagtatatcaa |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
19177611 |
tcctaaaagaaatagatttcaatttgttttccaaatgtaatataataaattagt-aaggtcaaaatataataagagtacaagactagtatagtatatcaa |
19177513 |
T |
|
| Q |
312 |
tgtgtgtgtattcctcctccttgtaattcctaaggaatataaaacttgttgaaactaaaccgagtcatgtttggtggaaaaaccatggcaatgttgcgtg |
411 |
Q |
| |
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|||||||||||||||||| |||| ||||||||| ||||| ||||| | | |||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19177512 |
tgtgtgtgtattcctccttcttgcaattcctaaagaataaaaaacatatagaaactaacccgagtcatgtttggtgcaaaaaccatggcaatgttgcgtg |
19177413 |
T |
|
| Q |
412 |
cattcatcttattcagatgttcttcttgtacaacatcagccatcagattgatagtccagttcaaaagtgaagcttcggtatgaggtaactgactcatcag |
511 |
Q |
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| T |
19177412 |
cattcatcttattcagatgctcctcttgtacaacatcagccatcagattgatagtccagttcaaaagtgaagcttcggtatgaggtaactgactcatcag |
19177313 |
T |
|
| Q |
512 |
ttcggcgcaatcttcttctgtctgacaggtcattacctgctctggagataaagaatccagaacacctcttggtaactccctaaaccaagccttcaagaat |
611 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19177312 |
ttcggcgcaatcttcttctgtctgacaagtcattacctgctctggagataaagaatccagaacacctcttggtaactccctaaaccaagccttcaagaat |
19177213 |
T |
|
| Q |
612 |
acacgaacaccaaattaaattatcaaaacttacatcaagtacataatatt |
661 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19177212 |
acacgaacaccaaattaaattatcaaaacttacatcaagtacataatatt |
19177163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 111 - 661
Target Start/End: Complemental strand, 27036607 - 27036054
Alignment:
| Q |
111 |
tgttgaacactgacacattagtttacatttaattacttctattttctcaaaattgttactagtgtcgacgtgtcagtgtctt------------tgctag |
198 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| |||| |||||||||||||| ||||||| |||||||||||| ||||||| || ||| |
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| T |
27036607 |
tgttgaacaccgacacattagtttacaattatttacatctattttctcaaa-ttgttacccgtgtcgacgtgtttgtgtcttgtctagcgtctttgttag |
27036509 |
T |
|
| Q |
199 |
tgctttatatacttcctaaaagaaatagatttcaatttgttttccaaatgtaatatagtaaattagtgaaggtcaaaatgtaataagagtgcaagactag |
298 |
Q |
| |
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|||| | || ||||| |||||| || |||||||||||||||||||||||| |||| ||||||||||||||||| ||| ||||| |||| |||||||| |
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| T |
27036508 |
cgcttcaggtagttccttaaagaactaaatttcaatttgttttccaaatgtagtataataaattagtgaaggtcagaatataatacgagtacaagactaa |
27036409 |
T |
|
| Q |
299 |
tatagtatatcaatgtgtgtgtattcctcctccttgtaattcctaaggaatataaaacttgttgaaactaaaccgagtcatgtttggtggaaaaaccatg |
398 |
Q |
| |
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|||||| ||| |||||||||||||||||||| || ||||||||| ||||| ||||||| |||| |||| | ||||||||||||||| ||||||||| |
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| T |
27036408 |
tatagtctataaatgtgtgtgtattcctcct---tgcaattcctaaagaata-aaaacttaatgaa-ctaacctgagtcatgtttggtg--aaaaccatg |
27036316 |
T |
|
| Q |
399 |
gcaatgttgcgtgcattcatcttattcagatgttcttcttgtacaacatcagccatcagattgatagtccagttcaaaagtgaagcttcggtatgaggta |
498 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27036315 |
gcaatgttgcacgcattcatcttattcagatgttcctcttgtacaacatcagccatcagattgatagtccagttcaaaagtgaagcttctgtatgaggta |
27036216 |
T |
|
| Q |
499 |
actgactcatcagttcggcgcaatcttcttctgtctgacaggtcattacctgctctggagataaagaatccagaacacctcttggtaactccctaaacca |
598 |
Q |
| |
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| ||||| ||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| |
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| T |
27036215 |
aatgacttgccagttcggcacaatcctcttctgtttgacattgcattacctgctctggagataaagaatccagaacacct-ttcgtagctccctaaacca |
27036117 |
T |
|
| Q |
599 |
agccttcaagaatacacgaacaccaaattaaattatcaaaacttacatcaagtacataatatt |
661 |
Q |
| |
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|||||| ||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |
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| T |
27036116 |
agcctttaagaatacaaaaacatcaaactaaattatcaaaatttacatcaagtacataatatt |
27036054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 27036701 - 27036647
Alignment:
| Q |
55 |
gtcacaaacacgaccattttcaaatgaaatattgcagaaaatatgtaggaccgaca |
110 |
Q |
| |
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||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
27036701 |
gtcacaaacgtgaccattttcaaat-aaatattgcagaaaatatgtagcaccgaca |
27036647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 373 - 498
Target Start/End: Complemental strand, 36407727 - 36407602
Alignment:
| Q |
373 |
gagtcatgtttggtggaaaaaccatggcaatgttgcgtgcattcatcttattcagatgttcttcttgtacaacatcagccatcagattgatagtccagtt |
472 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||| | || || ||||||||||| |||||||| | ||| | |
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| T |
36407727 |
gagtcatgtttggtgcgaaaaccatggcaatgttgcgtgcgttcatcttattgagattttcgtgttcgactacatcagccattagattgatggcccaatc |
36407628 |
T |
|
| Q |
473 |
caaaagtgaagcttcggtatgaggta |
498 |
Q |
| |
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||| |||| |||||| | |||||||| |
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| T |
36407627 |
caagagtgcagcttcagcatgaggta |
36407602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 433
Target Start/End: Original strand, 42527700 - 42527760
Alignment:
| Q |
373 |
gagtcatgtttggtggaaaaaccatggcaatgttgcgtgcattcatcttattcagatgttc |
433 |
Q |
| |
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||||||||||||||| ||||||||| ||||| || ||||| |||||||| |||| |||||| |
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|
| T |
42527700 |
gagtcatgtttggtgcaaaaaccattgcaatattacgtgcgttcatcttgttcaaatgttc |
42527760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 459
Target Start/End: Original strand, 39991063 - 39991149
Alignment:
| Q |
373 |
gagtcatgtttggtggaaaaaccatggcaatgttgcgtgcattcatcttattcagatgttcttcttgtacaacatcagccatcagat |
459 |
Q |
| |
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||||||||||||| | |||||||||||||||||| | ||||||||| || || | | || ||||| |||||||||||||| |||| |
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|
| T |
39991063 |
gagtcatgtttggagcaaaaaccatggcaatgtttcttgcattcattttgttaaactcctcctcttggacaacatcagccatgagat |
39991149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 375 - 463
Target Start/End: Original strand, 9246949 - 9247037
Alignment:
| Q |
375 |
gtcatgtttggtggaaaaaccatggcaatgttgcgtgcattcatcttattcagatgttcttcttgtacaacatcagccatcagattgat |
463 |
Q |
| |
|
|||||||| |||| |||||||| || | |||||| |||||||||||||| | ||||| | || |||||||||||||||| |||||| |
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| T |
9246949 |
gtcatgttgggtgcgaaaaccatagctacgttgcgcgcattcatcttattgaactgttcattttcaacaacatcagccatcaaattgat |
9247037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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