View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17753_low_2 (Length: 586)
Name: NF17753_low_2
Description: NF17753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17753_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 1539421 - 1539776
Alignment:
| Q |
18 |
atttaaattgttaatagggagtaacaacatatatatgactcaaaaacagcaaaattggataccgtatctataatttggtggttgatctgaatagatagaa |
117 |
Q |
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| T |
1539421 |
atttaaattgttaatagggagtaacaacatat----gactcaaaaacagcaaaattggataccgtatctataatttggtggttgatctgaatagatagaa |
1539516 |
T |
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| Q |
118 |
tctgatatcatattaaatttttatattacggtttaactcattcttgcaaaaactgttgtaaagctaagatcctctttatcatatgaatcaagcatatatg |
217 |
Q |
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| T |
1539517 |
tctgatatcatattaaatttttatattaccgtttaactcattcttacaaaaactgttgtaaagctaagatcctctttatcatatgaatcaagcatatatg |
1539616 |
T |
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| Q |
218 |
actccatttttaatttggaacaaaattcaatacagaatatcaaaaccaatgatttgtaaatggcataaggaaacataccaggagtagcagcaccaacagg |
317 |
Q |
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| T |
1539617 |
actccatttttaatttggaacaaaattcaatacagaatatcaaaaccaatgatttgtaaatggcataaggaaacataccaggagtagcagcaccaacagg |
1539716 |
T |
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| Q |
318 |
ggcgatagacactgtaaacaaaaacaattattcatcactgtcatatcacaaacctaggat |
377 |
Q |
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| T |
1539717 |
ggcgatagacactgtaaacaaaaacaattattcatcactgtcatgtcacaaacctaggat |
1539776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 500 - 572
Target Start/End: Original strand, 1539773 - 1539845
Alignment:
| Q |
500 |
ggattagaagtgtcctggtgtcagacacacggactgacgccgagacatgtgattacactaaattgtgtctgtg |
572 |
Q |
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| T |
1539773 |
ggattagaagtgtcccagtgtcagacacacggaccgacgccgagacatgtgattacactaaattgtgtctgtg |
1539845 |
T |
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