View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17753_low_5 (Length: 352)
Name: NF17753_low_5
Description: NF17753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17753_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 25 - 337
Target Start/End: Original strand, 7768252 - 7768564
Alignment:
| Q |
25 |
gctttagcttctttctgatatgaatctcaataatctttgttggttacttgtgtactaagtttcaactctattgatcatatcactagtttgctcccattta |
124 |
Q |
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| T |
7768252 |
gctttagcttctttctgatatgaatctcaataatctttgttggttacttgtgtactaagtttcaactctattgatcatatcactagtttgcgaccattta |
7768351 |
T |
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| Q |
125 |
taatattgcaaactctcttcatctttcatttgtgatctccctctttaccttgcacaatatttagtgttgatataaataaaatgtcctcaaatagtttgaa |
224 |
Q |
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| T |
7768352 |
taatattgcaaactctcttcatctttcatttgtgattttcctctttaccttgcacaatatttagtgttgatataaataaaatgtcctcaaatagtttgaa |
7768451 |
T |
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| Q |
225 |
aaagggaatcaagatgatgcactgtcaaatttaagtgatctattgggagaggtaaaagacatggctgttcacatgggatcagaaattgagaggttagtca |
324 |
Q |
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| T |
7768452 |
aaagggaatcaagatgatgcactgtcaaatttaagtgatctattgggagaggtaaaagacatggctgttcacatgggatcagaaattgagaggttagtca |
7768551 |
T |
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| Q |
325 |
attgcattattct |
337 |
Q |
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| T |
7768552 |
attgcattattct |
7768564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 197 - 328
Target Start/End: Complemental strand, 45391592 - 45391461
Alignment:
| Q |
197 |
taaataaaatgtcctcaaatagtttgaaaaagggaatcaagatgatgcactgtcaaatttaagtgatctattgggagaggtaaaagacatggctgttcac |
296 |
Q |
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| T |
45391592 |
taaataaagtgtcctgaaacagtttgaaaagggtaagcaagatgatgcactgtcaaatttaagtgatctattgggagagctaaaagacatggctgttgac |
45391493 |
T |
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| Q |
297 |
atgggatcagaaattgagaggttagtcaattg |
328 |
Q |
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| T |
45391492 |
atgggatcagaaattgagaggttagtcaattg |
45391461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 45391681 - 45391605
Alignment:
| Q |
118 |
ccatttataatattgcaaactctcttcatctttcatttgtgatctccctctttaccttgcacaatatttagtgttgatata |
198 |
Q |
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| T |
45391681 |
ccattaataatgttgcaaactct--tcat-tttcatttgtgattttcttctttaccttgcacaata-ttagtgttaatata |
45391605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 328
Target Start/End: Complemental strand, 7215269 - 7215161
Alignment:
| Q |
220 |
ttgaaaaagggaatcaagatgatgcactgtcaaatttaagtgatctattgggagaggtaaaagacatggctgttcacatgggatcagaaattgagaggtt |
319 |
Q |
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|||| |||| ||| |||||||||||||||||| || |||||||||| |||||||| | || | |||||| | |||||||| | ||||||||||||| |
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| T |
7215269 |
ttgagaaagagaagcaagatgatgcactgtcagatataagtgatctcttgggagaactgaagggcatggccatggacatgggaactgaaattgagaggta |
7215170 |
T |
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| Q |
320 |
agtcaattg |
328 |
Q |
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||| ||||| |
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| T |
7215169 |
agtaaattg |
7215161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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