View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17753_low_6 (Length: 321)
Name: NF17753_low_6
Description: NF17753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17753_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 45083489 - 45083194
Alignment:
| Q |
10 |
catcatcaaaggctgaccaagggtccaattcaaggaagactcgaagcgcttctgagacgctagatcacataataacagagaggaacaggagacgtgaact |
109 |
Q |
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| T |
45083489 |
catcatcaaaggctgaccacgggtcgaattcaaggaagactcgaagcgcttctgagacgctagatcacataataacagagaggaacaggagacgtgaact |
45083390 |
T |
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| Q |
110 |
tacaagaaagttcatagaactttcagcatttatacctggattgaagaaggttagtctgtaatctcatcgctaaatacgcaaaccaatttctttcttaatt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45083389 |
tacaagaaagttcatagaactttcagcatttatacctggactgaagaaggttagtctgtaatctcatcgctaaatacgcgaaccaatttctttcttaatt |
45083290 |
T |
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| Q |
210 |
ttttgtctcgacaattcaacttttatagtagttatcattggatagaagctataaaaagacttatctaatggctgtgtagacggacaaggttcatgt |
305 |
Q |
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| T |
45083289 |
ttttgtctcgacaattcaacttttatagtagttatcattggatagaagctataaaaagacttatctaatggctgtgtagacggacaaggttcatgt |
45083194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 45039123 - 45039284
Alignment:
| Q |
10 |
catcatcaaaggctgaccaagggtccaattcaaggaagactcgaagcgcttctgagacgctagatcacataataacagagaggaacaggagacgtgaact |
109 |
Q |
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||||||||| ||| |||||||||| ||||| | |||| |||||| | |||| || || |||||||||||||| ||||||| || ||||||| ||| |
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| T |
45039123 |
catcatcaacagctaaccaagggtcgaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtcagagagaaataggagacaactact |
45039222 |
T |
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| Q |
110 |
tacaagaaagttcatagaactttcagcatttatacctggattgaagaaggttagtctgtaat |
171 |
Q |
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| T |
45039223 |
tacaagtaagatcatagaactttcggccttgatacctggattgaagaaggttagtatgtaat |
45039284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 45064778 - 45064917
Alignment:
| Q |
27 |
caagggtccaattcaaggaagactcgaagcgcttctgagacgctagatcacataataacagagaggaacaggagacgtgaacttacaagaaagttcatag |
126 |
Q |
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| T |
45064778 |
caagggtcaaattcgaagaagcctcgaagcgcttatgagacagtaggtcacataatgtcagagaggaatatgagacaacttcttacaagtaagatcatat |
45064877 |
T |
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| Q |
127 |
aactttc-agcatttatacctggattgaagaaggttagtct |
166 |
Q |
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| T |
45064878 |
aactttcgagc-tttataccaggattgaagaaggttagtct |
45064917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 45039322 - 45039396
Alignment:
| Q |
233 |
tatagtagttatcattggatagaagctataaa--aagacttatctaatggctgtgtagacggacaaggttcatgt |
305 |
Q |
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| T |
45039322 |
tatagtagttatcattggatagaagctacaaactaaaaactatctaatgtctgtgtagattgataaggttcatgt |
45039396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 45064955 - 45064987
Alignment:
| Q |
230 |
ttttatagtagttatcattggatagaagctata |
262 |
Q |
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| T |
45064955 |
ttttatagtagttatcattggatagatgctata |
45064987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 29375815 - 29375974
Alignment:
| Q |
12 |
tcatcaaaggctgaccaagggtccaattcaaggaagactcgaagcgcttctgagacgctagatcacataataacagagaggaacaggagacgtgaactta |
111 |
Q |
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||||||| |||| ||||||||| ||||||| |||| || |||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||| |
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| T |
29375815 |
tcatcaatggctagccaagggtcgaattcaaagaagcctagaagcgcttctgagacactagatcacataatgtcagagaggaataggagacagctactta |
29375914 |
T |
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| Q |
112 |
caagaaagttcatagaactttcagcatttatacctggattgaagaaggttagtctgtaat |
171 |
Q |
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|||| ||| ||||||||||||| || |||||||||||||| |||||||| ||| |||||| |
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| T |
29375915 |
caaggaagatcatagaactttcggcctttatacctggattaaagaaggtgagtttgtaat |
29375974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 29377084 - 29377149
Alignment:
| Q |
240 |
gttatcattggatagaagctataaaaagacttatctaatggctgtgtagacggacaaggttcatgt |
305 |
Q |
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| T |
29377084 |
gttataattggatagaagctacaataaaaattatctaatggttgtgtagattgataaggttcatgt |
29377149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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