View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17753_low_7 (Length: 300)
Name: NF17753_low_7
Description: NF17753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17753_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 283
Target Start/End: Original strand, 45039101 - 45039371
Alignment:
| Q |
13 |
catcatgattctttgcctttgtcatcatcaacagctaaacaagggtcaaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtcag |
112 |
Q |
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| T |
45039101 |
catcatgattctttgcctttgtcatcatcaacagctaaccaagggtcgaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtcag |
45039200 |
T |
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| Q |
113 |
agaggaataggagacaactacttacaagtaagatcatagaactttcggccttgatacctggattgaagaaggttagtatgtaatatattatattaaacct |
212 |
Q |
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| T |
45039201 |
agagaaataggagacaactacttacaagtaagatcatagaactttcggccttgatacctggattgaagaaggttagtatgtaatatattatattaaacct |
45039300 |
T |
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| Q |
213 |
agatgaatgagtaaatttttatatagtagttatcattggatagaagctacaaactaaaaactatctaatgt |
283 |
Q |
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| T |
45039301 |
agatgaatgagtaaatttttatatagtagttatcattggatagaagctacaaactaaaaactatctaatgt |
45039371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 45064737 - 45065004
Alignment:
| Q |
13 |
catcatgattctttgcctttgtcatcatcaacag--ctaaacaagggtcaaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtc |
110 |
Q |
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| T |
45064737 |
catcaagattatttgcctttgtcatcatcagcgcgactaaacaagggtcaaattcgaagaagcctcgaagcgcttatgagacagtaggtcacataatgtc |
45064836 |
T |
|
| Q |
111 |
agagaggaataggagacaactacttacaagtaagatcatagaactttcggccttgatacctggattgaagaaggttagtatgtaatatattatattaaac |
210 |
Q |
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| T |
45064837 |
agagaggaatatgagacaacttcttacaagtaagatcatataactttcgagctttataccaggattgaagaaggttagtctataacatattatattaaac |
45064936 |
T |
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| Q |
211 |
ctagatgaatgagtaaatttttatatagtagttatcattggatagaagctacaaactaaaaactatctaa |
280 |
Q |
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| T |
45064937 |
ctagatgaatgagtaa--ttttttatagtagttatcattggatagatgctatacaataaaaattatctaa |
45065004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 45083508 - 45083328
Alignment:
| Q |
16 |
catgattctttgcctttgtcatcatcaacagctaaacaagggtcaaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtcagaga |
115 |
Q |
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|||||||||||||||||||||||||||| ||| | || ||||| ||||| | |||| |||||| | |||| || || |||||||||||||| |||||| |
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| T |
45083508 |
catgattctttgcctttgtcatcatcaaaggctgaccacgggtcgaattcaaggaagactcgaagcgcttctgagacgctagatcacataataacagaga |
45083409 |
T |
|
| Q |
116 |
ggaataggagacaactacttacaagtaagatcatagaactttcggccttgatacctggattgaagaaggttagtatgtaat |
196 |
Q |
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| T |
45083408 |
ggaacaggagacgtgaacttacaagaaagttcatagaactttcagcatttatacctggactgaagaaggttagtctgtaat |
45083328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 29375794 - 29376024
Alignment:
| Q |
16 |
catgattctttgcctttgtcatcatcaacagctaaacaagggtcaaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtcagaga |
115 |
Q |
| |
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|||||||||||||||||||| ||||||| |||| |||||||| ||||| ||||||||| ||| | |||| || ||||||||||||||||||||||||| |
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| T |
29375794 |
catgattctttgcctttgtcgtcatcaatggctagccaagggtcgaattcaaagaagcctagaagcgcttctgagacactagatcacataatgtcagaga |
29375893 |
T |
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| Q |
116 |
ggaataggagacaactacttacaagtaagatcatagaactttcggccttgatacctggattgaagaaggttagtatgtaatatattatattaaacctaga |
215 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||| || |
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| T |
29375894 |
ggaataggagacagctacttacaaggaagatcatagaactttcggcctttatacctggattaaagaaggtgagtttgtaatatattatattaaaccagga |
29375993 |
T |
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| Q |
216 |
tgaatgagtaaatttttatatagtagttatcat |
248 |
Q |
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|||||||||||||| ||||||||||||||| |
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| T |
29375994 |
caaatgagtaaatttt--tatagtagttatcat |
29376024 |
T |
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