View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17754_high_12 (Length: 380)

Name: NF17754_high_12
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17754_high_12
NF17754_high_12
[»] chr1 (11 HSPs)
chr1 (16-322)||(15023143-15023463)
chr1 (16-322)||(15009026-15009346)
chr1 (16-322)||(15030163-15030444)
chr1 (16-218)||(15000518-15000734)
chr1 (194-318)||(15015306-15015431)
chr1 (227-318)||(15000329-15000420)
chr1 (16-106)||(14501806-14501896)
chr1 (242-317)||(14501619-14501694)
chr1 (242-317)||(14535074-14535149)
chr1 (227-288)||(15000425-15000486)
chr1 (16-149)||(15035091-15035219)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 15023463 - 15023143
Alignment:
Q  16 caattacaaacatgtagaagaacaaaataagacatgacattggtaagagcttcattctgtgaagtattttggaaatttcaacacaatgaaattattggca 115  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15023463 caattacaaacacttagaagaacaaaataagacatgacattggtaagagcttcattctttgaagtattttggaaatttcaacacaatgaaattattggca 15023364  T
Q  116 atcactgagatatatataattgaactagacacttgtattatgatg--------------ggagatttaggtgatatttataatgcattgtaattgatatt 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||||              |||||||||||||||||||||||||||||||||||||||||    
T  15023363 atcactgagatatatataattgaactagacacttgtatcatgatgaatgcattacaatgggagatttaggtgatatttataatgcattgtaattgatatt 15023264  T
Q  202 cccacttgtaatagtgaagactcagctcattaaagtcttccacttttgtctttaaggtgaagacttagacttattattttggttttgatcagaaacatga 301  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15023263 cccacttgtaatagtgaagacttagctcattaaagtctttcacttttgtctttaaggtgaagacttagacttattattgtggttttgatcagaaacatga 15023164  T
Q  302 ggttggagtaataggggccac 322  Q
    |||||||||||||||||||||    
T  15023163 ggttggagtaataggggccac 15023143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 15009346 - 15009026
Alignment:
Q  16 caattacaaacatgtagaagaacaaaataagacatgacattggtaagagcttcattctgtgaagtattttggaaatttcaacacaatgaaattattggca 115  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15009346 caattacaaacacatagaagaacaaaataagacatggcattggtaagagcttcattctttgaagtattttggaaatttcaacacaatgaaattattggca 15009247  T
Q  116 atcactgagatatatataattgaactagacacttgtattatgatg--------------ggagatttaggtgatatttataatgcattgtaattgatatt 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||||              |||||||||||||||||||||||||||||||||||||||||    
T  15009246 atcactgagatatatataattgaactagacacttgtatcatgatgaatgcattacaatgggagatttaggtgatatttataatgcattgtaattgatatt 15009147  T
Q  202 cccacttgtaatagtgaagactcagctcattaaagtcttccacttttgtctttaaggtgaagacttagacttattattttggttttgatcagaaacatga 301  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15009146 cccacttgtaatagtgaagacttagctcattaaagtctttcacttttgtctttaaggtgaagacttagacttattattgtggttttgatcagaaacatga 15009047  T
Q  302 ggttggagtaataggggccac 322  Q
    |||||||||||||||||||||    
T  15009046 ggttggagtaataggggccac 15009026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 15030444 - 15030163
Alignment:
Q  16 caattacaaacatgtagaagaacaaaataagacatgacattggtaagagcttcattctgtgaagtattttggaaatttcaacacaatgaaattattggca 115  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  15030444 caattacaaacacatagaagaacaaaataagacatggcattggtaagagcttcattctttgaagtattttggaaatttcaacagaatgaaattattggca 15030345  T
Q  116 atcactgagatatatataattgaactagacacttgtattatgatgggagatttaggtgatatttataatgcattgtaattgatattcccacttgtaatag 215  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15030344 agcactgagatatatataattgaactagacacttgtattatgatgggagatttaggtgatatttataatgcattgtaattgatattcccacttgtaatag 15030245  T
Q  216 tgaagactcagctcattaaagtcttccacttttgtctttaaggtgaagacttagacttattattttggttttgatcagaaacatgaggttggagtaatag 315  Q
    |||||||                      |||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||    
T  15030244 tgaagac----------------------ttttgtctttaaggtgaagacttagac---ttattgtggttttgatcagaaacatgaggttggagtaatag 15030170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 15000734 - 15000518
Alignment:
Q  16 caattacaaacatgtagaagaacaaaataagacatgacattggtaagagcttcattctgtgaagtattttggaaatttcaacacaatgaaattattggca 115  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||| |||||  |||| ||||| |||||||||||||||||||||||||||||||||||    
T  15000734 caattacaaacacatagaagaacaaaataagacacgacattggtaatagcttatttctttgaagcattttggaaatttcaacacaatgaaattattggca 15000635  T
Q  116 atcactgagatatatataattgaactagacacttgtattatg--------------atgggagatttaggtgatatttataatgcattgtaattgatatt 201  Q
     | ||||| ||||||||||||||||||||||||| |||||||              ||||||||| ||||||||||||||||||| ||||||||||| ||    
T  15000634 tttactgaaatatatataattgaactagacacttatattatgatgaatgcattataatgggagatgtaggtgatatttataatgctttgtaattgatgtt 15000535  T
Q  202 cccacttgtaatagtga 218  Q
    |||| |||| |||||||    
T  15000534 cccatttgtcatagtga 15000518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 194 - 318
Target Start/End: Complemental strand, 15015431 - 15015306
Alignment:
Q  194 ttgatattcccacttgtaatagtgaagactcag-ctcattaaagtcttccacttttgtctttaaggtgaagacttagacttattattttggttttgatca 292  Q
    |||||||||||| |||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||    
T  15015431 ttgatattcccatttgtaacagtgaagagtcaggctcatcaaagtcttccacttttgtctttaaggtgaagacttggacttattagggtggttttgatca 15015332  T
Q  293 gaaacatgaggttggagtaatagggg 318  Q
    ||||||||||||||| ||||||||||    
T  15015331 gaaacatgaggttggtgtaatagggg 15015306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 227 - 318
Target Start/End: Complemental strand, 15000420 - 15000329
Alignment:
Q  227 ctcattaaagtcttccacttttgtctttaaggtgaagacttagacttattattttggttttgatcagaaacatgaggttggagtaatagggg 318  Q
    |||||| |||||||||||||||||||| ||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  15000420 ctcattgaagtcttccacttttgtcttcaagttgaagacttggacttattatggtggttttgatcagaaacatgaggttggagtaatagggg 15000329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 14501896 - 14501806
Alignment:
Q  16 caattacaaacatgtagaagaacaaaataagacatgacattggtaagagcttcattctgtgaagtattttggaaatttcaacacaatgaaa 106  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||  | ||||| |||||| |||||| ||||||||||||    
T  14501896 caattacaaacacatagaagaacaaaataagacacgacattggtaagagctttatcttctgaagcattttgaaaatttgaacacaatgaaa 14501806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 14501694 - 14501619
Alignment:
Q  242 cacttttgtctttaaggtgaagacttagacttattattttggttttgatcagaaacatgaggttggagtaataggg 317  Q
    ||||||||||||||   |||||||| |||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  14501694 cacttttgtctttagtatgaagactgagacttattatggtggttttgatcagaaacacgaggttggagtaataggg 14501619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 14535074 - 14535149
Alignment:
Q  242 cacttttgtctttaaggtgaagacttagacttattattttggttttgatcagaaacatgaggttggagtaataggg 317  Q
    ||||||||||||||   |||||||| |||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  14535074 cacttttgtctttagtatgaagactgagacttattatggtggttttgatcagaaacacgaggttggagtaataggg 14535149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 15000486 - 15000425
Alignment:
Q  227 ctcattaaagtcttccacttttgtctttaaggtgaagacttagacttattattttggttttg 288  Q
    ||||||||||||||||||||||||||| ||| |||| |||||||||||||||  ||||||||    
T  15000486 ctcattaaagtcttccacttttgtcttaaagttgaaaacttagacttattatggtggttttg 15000425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 15035219 - 15035091
Alignment:
Q  16 caattacaaacatgtagaagaacaaaataagacatgacattggtaagagcttcattctgtgaagtattttggaaatttcaacacaatgaaattattggca 115  Q
    |||||||| |||  ||||||||||||| |||||| ||||||||||||| |||||| || ||||| ||||  |||  | ||| | ||||||| ||||||||    
T  15035219 caattacatacacatagaagaacaaaagaagacacgacattggtaagaacttcatcctctgaagcattt--gaa--tacaataaaatgaaagtattggca 15035124  T
Q  116 atcactgagatatatataattgaactagacactt 149  Q
    ||||||||  ||| ||||||||||| ||| ||||    
T  15035123 atcactgatgtat-tataattgaacaagagactt 15035091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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