View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17754_high_28 (Length: 242)

Name: NF17754_high_28
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17754_high_28
NF17754_high_28
[»] chr4 (5 HSPs)
chr4 (17-102)||(8442654-8442737)
chr4 (53-114)||(8436605-8436666)
chr4 (154-224)||(8436135-8436205)
chr4 (132-211)||(8442543-8442621)
chr4 (45-102)||(8446931-8446988)
[»] chr2 (1 HSPs)
chr2 (67-102)||(11309513-11309548)


Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 8442737 - 8442654
Alignment:
Q  17 aggaaagtggtgttagcaattagttgcattttatggatattaacatggtttatattgattatgagtgtgcatatttgaaatagtat 102  Q
    |||||||| |||||||||||||||||||||||||||||  ||||| |||| |||||||||||||||||||||||||||||||||||    
T  8442737 aggaaagtagtgttagcaattagttgcattttatggat--taacaaggttaatattgattatgagtgtgcatatttgaaatagtat 8442654  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 8436666 - 8436605
Alignment:
Q  53 atattaacatggtttatattgattatgagtgtgcatatttgaaatagtatgtattttcatta 114  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8436666 atattaacaaggttaatattgattatgagtgtgcatatttgaaatagtatgtattttcatta 8436605  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 8436205 - 8436135
Alignment:
Q  154 aaatttgaaaataatatttctcnnnnnnngcagtgatgatttcttaaacggtttgtgcaacgacatttgca 224  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  8436205 aaatttgaaaataatatttctctttttttgcagtgatgatttcttaaacggtttgtgcaacgacatttgca 8436135  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 8442621 - 8442543
Alignment:
Q  132 tcattatgaggaattagtgtgcaaatttgaaaataatatttctcnnnnnnngcagtgatgatttcttaaacggtttgtgc 211  Q
    ||||||||||||||  ||||||||||||||||||||||||||||       ||||||||||||||| |||||||||||||    
T  8442621 tcattatgaggaatgtgtgtgcaaatttgaaaataatatttctc-ttttttgcagtgatgatttctcaaacggtttgtgc 8442543  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 8446988 - 8446931
Alignment:
Q  45 ttttatggatattaacatggtttatattgattatgagtgtgcatatttgaaatagtat 102  Q
    |||||||||||| |||| |||| ||||||||||||||||||||| |||||| ||||||    
T  8446988 ttttatggatatgaacaaggttaatattgattatgagtgtgcatctttgaagtagtat 8446931  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 11309548 - 11309513
Alignment:
Q  67 tatattgattatgagtgtgcatatttgaaatagtat 102  Q
    ||||||||||||||||||||||||||||||||||||    
T  11309548 tatattgattatgagtgtgcatatttgaaatagtat 11309513  T

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