View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_high_30 (Length: 208)
Name: NF17754_high_30
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 39280900 - 39280703
Alignment:
| Q |
1 |
gttttacagagagccttaataaggccattataagtaatattatcaaggggacaccctctaaatcgcatttcaccaacaagcttatctacttgttgaatta |
100 |
Q |
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| T |
39280900 |
gttttacagagagccttaataaggccattataagtaatattatcaaggggacaccctctaaatcgcatttcaccaacaagcttatctgcttgttgaatca |
39280801 |
T |
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| Q |
101 |
actctagcctaagaaatgcatgaatcagcgtattgtatgttacagtgttagcgataacaccctccaagagcatgtcacgatacaaaccctatgcttct |
198 |
Q |
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| T |
39280800 |
actctagccttagaaatgcatgaatcagcgtattgtatgttacagtgttagcgataacaccctccaagagcatgtcacgatacaaacccaatgcttct |
39280703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 17349529 - 17349726
Alignment:
| Q |
1 |
gttttacagagagccttaataaggccattataagtaatattatcaaggggacaccctctaaatcgcatttcaccaacaagcttatctacttgttgaatta |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||| |||||||||| |
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| T |
17349529 |
gttttacagagagctttaataaggccattataagtaatattatcaaggggaaaccctcgaaatagcatttcattaacaagcttatacgcttgttgaatcg |
17349628 |
T |
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| Q |
101 |
actctagcctaagaaatgcatgaatcagcgtattgtatgttacagtgttagcgataacaccctccaagagcatgtcacgatacaaaccctatgcttct |
198 |
Q |
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| T |
17349629 |
aatctcccctaagaaatgcgtgaattaacgtattgtatgttatagtgttagcaataacaccctccaagaacatgtcatgatacaaacccaacgcttct |
17349726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 17349304 - 17349492
Alignment:
| Q |
1 |
gttttacagagagccttaataaggccattataagtaatattatcaaggggacaccctctaaatcgcatttcaccaacaagcttatctacttgttgaatta |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||| |||||||||| |
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| T |
17349304 |
gttttacagagagctttaataaggccattataagtaatattatcaaggggaaaccctcgaaatagcatttcattaacaagcttatacgcttgttgaatcg |
17349403 |
T |
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| Q |
101 |
actctagcctaagaaatgcatgaatcagcgtattgtatgttacagtgttagcgataacaccctccaagagcatgtcacgatacaaaccc |
189 |
Q |
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| ||| |||||||||||| ||||| | |||||||||||||| ||||||||| |||||||||||||||| ||||||| ||||||||||| |
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| T |
17349404 |
aatctcccctaagaaatgcgtgaattaacgtattgtatgttatagtgttagcaataacaccctccaagaacatgtcatgatacaaaccc |
17349492 |
T |
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