View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_high_5 (Length: 521)
Name: NF17754_high_5
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 14561662 - 14561898
Alignment:
| Q |
9 |
agcaaaggcattgatttgttcaagaaaactatttcagcaattcttggttgatggttacacaatgatggaagtagataggctaaattggcttaggaaaaat |
108 |
Q |
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| T |
14561662 |
agcaaagacattgatttgttcaagaaaactatttcagcaattcttggttgatggttacacaatgatggaagtagataggctaaattggcttaggaaaaat |
14561761 |
T |
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| Q |
109 |
caatccaaattaagagtaggcaaatacagacagatcaatgcaaattctaccaataataatcagaatcagccaacatttcaaggaaaaagggtggtgttac |
208 |
Q |
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| T |
14561762 |
caatccaaattaagagtaggcaaatacagacagatcaatgcaaattctaccaataataatcagaatcagccaacatttcaaggaaaaagggtggtgttac |
14561861 |
T |
|
| Q |
209 |
catcaacttttgttggtagcaaaagatacatggatca |
245 |
Q |
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| T |
14561862 |
catcaacttttgttggtagcaaaagatacatggatca |
14561898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 310 - 505
Target Start/End: Original strand, 14561963 - 14562157
Alignment:
| Q |
310 |
acatgtaatcctacctggccagaaataacaagagagcttgccaaaaatgatctaaaaccacaagatcgtctagatattattgctaggatcttcaagatta |
409 |
Q |
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| T |
14561963 |
acatgtaatcctacctagccagaaataacaagagagcttgccaaaaatgatctaaaaccacaagatcgtctagatattattgctaggatcttcaagatta |
14562062 |
T |
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| Q |
410 |
aatttgacgagcttatgacagacttgaccnnnnnnncatgtacttggcaaagttttagcacgtaagtatttacccgatatttttaatgttccaaac |
505 |
Q |
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| T |
14562063 |
aatttgacgagcttatgacagacttgacc-aaaaaacatgtacttggcaaagttttagcacgtaagtatttacccgatatttttaatgttccaaac |
14562157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 245
Target Start/End: Complemental strand, 152669 - 152481
Alignment:
| Q |
57 |
tgatggttacacaatgatggaagtagataggctaaattggcttaggaaaaatcaatccaaattaagagtaggcaaatacagacagatcaatgcaaattct |
156 |
Q |
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||||||||| ||||||||||||| || ||||| |||||| | |||| ||||||||| || || || ||||| |||||||||||||| | || | || |
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| T |
152669 |
tgatggttatacaatgatggaagccgagaggcttaattggttaaggagaaatcaatcgaagttgagggtaggaaaatacagacagatagcagaaactcct |
152570 |
T |
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| Q |
157 |
accaataataatcagaatcagccaacatttcaaggaaaaagggtggtgttaccatcaacttttgttggtagcaaaagatacatggatca |
245 |
Q |
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| T |
152569 |
accacaaataaccaaagtggaccaacattgaaaggaaaaagggtagtgttaccatcaacatttgttggtagtaaaagatacatggatca |
152481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 245
Target Start/End: Complemental strand, 18064998 - 18064810
Alignment:
| Q |
57 |
tgatggttacacaatgatggaagtagataggctaaattggcttaggaaaaatcaatccaaattaagagtaggcaaatacagacagatcaatgcaaattct |
156 |
Q |
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||||||||| ||||||||||||| || ||||| |||||| | |||| ||||||||| || || || ||||| |||||||||||||| | || | || |
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| T |
18064998 |
tgatggttatacaatgatggaagccgagaggcttaattggttaaggagaaatcaatcgaagttgagggtaggaaaatacagacagatagcagaaactcct |
18064899 |
T |
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| Q |
157 |
accaataataatcagaatcagccaacatttcaaggaaaaagggtggtgttaccatcaacttttgttggtagcaaaagatacatggatca |
245 |
Q |
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| T |
18064898 |
accacaaataaccaaagtggaccaacattgaaaggaaaaagggtagtgttaccatcaacatttgttggtagtaaaagatacatggatca |
18064810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 22073289 - 22073252
Alignment:
| Q |
208 |
ccatcaacttttgttggtagcaaaagatacatggatca |
245 |
Q |
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| T |
22073289 |
ccatcaacttttgttggaagcaaaaggtacatggatca |
22073252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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