View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_high_7 (Length: 456)
Name: NF17754_high_7
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 34829493 - 34829930
Alignment:
| Q |
1 |
aataaataatactaacaaaccatcaacttctatgtagctatattgtcaccattatacattaataatctacgaagaagtttttcacatagctaatttctgc |
100 |
Q |
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| T |
34829493 |
aataaataatactaacaaaccatcaacttctatgtagctatattgtcaccattatacattaataatctacgaagaagtttttcacatagctaatttctgc |
34829592 |
T |
|
| Q |
101 |
tcaacccagctttgtttgcatccattgccaatcgaataaaggaagagccatcaccttgcataaccaagtttggaataaattgggattcagagcttcccaa |
200 |
Q |
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| T |
34829593 |
tcaacccagctttgtttgcatccattgccaatcgaataaaggaagagccatcaccttgcataaccaagtttggaataaattgggattcagagcttcccaa |
34829692 |
T |
|
| Q |
201 |
attatgaccaacatggtcataatttatgaaaggattgtagtattccataggaggagcttcattatcatcatggacatttccttgatttatcatcagttca |
300 |
Q |
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| T |
34829693 |
attatgaccaacatggtcataatttatgaaaggattgtagtattccataggaggagcttcattatcatcatggacatttccttgatttatcatcagttca |
34829792 |
T |
|
| Q |
301 |
ttttcataactagtagtaaccttgataatattggaattattaccaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccat |
400 |
Q |
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| T |
34829793 |
ttttcataactagtagtaaccttgataatattggaattattaccaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccat |
34829892 |
T |
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| Q |
401 |
ctttctcttcttcattactaccaaggtggtattgatgc |
438 |
Q |
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| T |
34829893 |
ctttctcttcttcattactaccaaggtggtattgatgc |
34829930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 28948725 - 28948785
Alignment:
| Q |
378 |
ctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgc |
438 |
Q |
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| T |
28948725 |
ctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgc |
28948785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 434
Target Start/End: Complemental strand, 38887192 - 38887100
Alignment:
| Q |
342 |
accaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattg |
434 |
Q |
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| T |
38887192 |
accaccacattgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttccaagatggtattg |
38887100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 438
Target Start/End: Complemental strand, 4235894 - 4235807
Alignment:
| Q |
351 |
ttgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgc |
438 |
Q |
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| T |
4235894 |
ttgtctaggctgtgtctggtagaagatctttgaagcaacgaattctccatctctttcttcttcattcataccaagatggtattgatgc |
4235807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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