View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_low_1 (Length: 838)
Name: NF17754_low_1
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Complemental strand, 738128 - 737726
Alignment:
| Q |
17 |
caatcagatcttaatccctgattaaagaataggtaaaaatcatatgtttgctttaggatggtccatcatgcatatgcttgagatttgccttaatgttcta |
116 |
Q |
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| T |
738128 |
caatcagatcttaatccctgattaaa-aataggtaaaaatcatatgtttgctttaggatggtccatcatacatatgcttgagatttgccttaatgttcta |
738030 |
T |
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| Q |
117 |
tagatcttgtagtcgaatgagagcttaaggtactcgaatgatcttgtctagcgaatgtgggacttcttgtgttctgctatattttgtaaagttcaaacta |
216 |
Q |
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| T |
738029 |
tagatcttgtagtcgaatgagagcttaaggtactcgaatgatcttgtctagcgaatgtgggacttgttgtgttctgctatattttgtaaagttcaaacta |
737930 |
T |
|
| Q |
217 |
aattcattcaactgattttgaatagttaaagtatcctgtacatagtcgaactaaccgataaacactgtgacagacggtcttttattcttccctttagttc |
316 |
Q |
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| T |
737929 |
aat-cattcaactgattttgaatagttaaagtatcctgtacatagtcgaactaaccgataaacactgtgacagacggtcttttattcttccctttagttc |
737831 |
T |
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| Q |
317 |
tcaattttcactctcctagtactacatttattttaagttttttatatgacatgattcagaatctggttcttttgtttgattggtggc-tagtgttgaatc |
415 |
Q |
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| T |
737830 |
tcaattttcactctcctagtactacatttattttaagttttttatatgacatgattcagaatctggttcttttgtttgattggtggcttagtgttgaatc |
737731 |
T |
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| Q |
416 |
agttg |
420 |
Q |
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| T |
737730 |
agttg |
737726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 465 - 826
Target Start/End: Complemental strand, 737681 - 737320
Alignment:
| Q |
465 |
aattatgtttcactcattattggttttgcatgtaatgtaccatacacagagtaaacctttcaaattttgctcctataatgagcctgcctaaaaacctttc |
564 |
Q |
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| T |
737681 |
aattatgtttcactcattattggttttgcatgtaatgtaccatacacagagtaaacctttcaaattttgctcctataatgagcctgcctaaaaacctttc |
737582 |
T |
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| Q |
565 |
gagtttcaaatcatttactaaatttgtggaattaccacttagtttggtcttcagcactcagttcaattttctgaagggaacactctactaatattactcg |
664 |
Q |
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| T |
737581 |
gagtttcaaatcatttactaaatttgtggaattaccacttagtttggtcttcagtactcagttcaattttctgaagggaacactctactaatattactcg |
737482 |
T |
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| Q |
665 |
aagcatgccaatattttcaccaataaaacttatggatgcatttagtcttgtgcatgcaccatcatatcttgaagactagtggtatactaataaaatttac |
764 |
Q |
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| T |
737481 |
aagcatgccaatattttcaccaataaaacttatggatacatttagtcttgtgcatgcaccatcatatcttgaagactagtggtatactaataaaatttac |
737382 |
T |
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| Q |
765 |
ataatccagatagccatgctatattacatctaatgaaattttgataccctccactgcagaat |
826 |
Q |
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| T |
737381 |
ataatccagatagccatgttatattatatctaatgaaattttgataccctccagtgcagaat |
737320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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