View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_low_11 (Length: 414)
Name: NF17754_low_11
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 58 - 408
Target Start/End: Complemental strand, 36135630 - 36135280
Alignment:
| Q |
58 |
aaaacttaaaaagaacatcatcaagccagaaagattgcaatnnnnnnn-ccttaccatcaatggcacctaggtcacccatgcgtccatatatcccttcta |
156 |
Q |
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| T |
36135630 |
aaaacttaaaaagaacatcatcaagccagaaagattgcaataaaaaaaaccttaccatcaatggcacctaggtcacccatgcgtccatatatcccttcta |
36135531 |
T |
|
| Q |
157 |
tttgtccggtttccttagctttcatgattgcttttagaactgatccctgactcttttctgaatctaaaacagacttcagttcagcaactttctgtctagc |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36135530 |
tttgtccggtttccttagctttcatgattgcttttagaactgatccctgactcttctctgaatctaaaacagacttcagttcagcaactttctgtctagc |
36135431 |
T |
|
| Q |
257 |
aacttgttcaggagcaattacggcatcttgtttttggatgcattccttaagaaaaagaacattatcaccaaaagcctgggnnnnnnnntgttaaaagtgg |
356 |
Q |
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| T |
36135430 |
aacttgttcaggagcaattacggcatcttgtttttggatgcattccttaagaaaaagaacattatcaccaaaagcctgggaaaaaaaatgtt-aaagtgg |
36135332 |
T |
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| Q |
357 |
aataaagaaggaaaatttactcacttcttccactctgagtttcctatgcttc |
408 |
Q |
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| T |
36135331 |
aataaagaaggaaaatttactcacttcttccactctgagtttccaatgcttc |
36135280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 36136229 - 36136187
Alignment:
| Q |
18 |
agaggtatattctgatcacatacaatgtcaatacatcaataaa |
60 |
Q |
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| T |
36136229 |
agaggtatattctgatcacatacaatgtcaatacatcaataaa |
36136187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 82 - 336
Target Start/End: Complemental strand, 30816560 - 30816306
Alignment:
| Q |
82 |
gccagaaagattgcaatnnnnnnnccttaccatcaatggcacctaggtcacccatgcgtccatatatcccttctatttgtccggtttccttagctttcat |
181 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30816560 |
gccagaaagattgcaattaaaaaaccttaccatcaatggcacctaggtcacccatccgtccatatattccttctatttgtccggtttccttagctttcat |
30816461 |
T |
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| Q |
182 |
gattgcttttagaactgatccctgactcttttctgaatctaaaacagacttcagttcagcaactttctgtctagcaacttgttcaggagcaattacggca |
281 |
Q |
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|| ||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||| |||||||||||| |||||||| ||| ||| | |||| |
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| T |
30816460 |
gactgcttttagaactgatccctggctcttctctgaatccaaaacagacttcatttcagcaaccttctgtctagcaccttgttcaagaggaatcagggca |
30816361 |
T |
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| Q |
282 |
tcttgtttttggatgcattccttaagaaaaagaacattatcaccaaaagcctggg |
336 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30816360 |
tcttgttttttgatacattccttaagaaaaagaacattatcaccaaaagcctggg |
30816306 |
T |
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