View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17754_low_13 (Length: 395)

Name: NF17754_low_13
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17754_low_13
NF17754_low_13
[»] chr1 (15 HSPs)
chr1 (1-271)||(9583148-9583416)
chr1 (359-395)||(15911670-15911706)
chr1 (355-395)||(37696243-37696283)
chr1 (360-395)||(7764460-7764495)
chr1 (360-395)||(20224355-20224390)
chr1 (353-395)||(52201358-52201399)
chr1 (358-395)||(1712367-1712404)
chr1 (358-395)||(8770460-8770497)
chr1 (358-395)||(32341771-32341808)
chr1 (358-395)||(39427408-39427445)
chr1 (358-395)||(47113666-47113703)
chr1 (359-395)||(6606534-6606569)
chr1 (359-395)||(11018681-11018717)
chr1 (359-391)||(35580736-35580768)
chr1 (359-395)||(52143444-52143480)
[»] chr5 (19 HSPs)
chr5 (359-395)||(17235134-17235170)
chr5 (361-395)||(25693901-25693935)
chr5 (351-395)||(8986889-8986933)
chr5 (360-395)||(20974688-20974723)
chr5 (356-395)||(35306981-35307020)
chr5 (356-395)||(42739522-42739561)
chr5 (361-395)||(6815500-6815534)
chr5 (358-392)||(12610241-12610275)
chr5 (361-395)||(14647967-14648001)
chr5 (357-395)||(34082380-34082418)
chr5 (358-395)||(6815708-6815745)
chr5 (351-392)||(10169005-10169046)
chr5 (358-395)||(23263142-23263179)
chr5 (358-395)||(34606649-34606686)
chr5 (358-391)||(43222974-43223007)
chr5 (359-395)||(2710616-2710652)
chr5 (363-395)||(33749249-33749281)
chr5 (355-395)||(37887666-37887706)
chr5 (359-395)||(40687664-40687700)
[»] chr6 (16 HSPs)
chr6 (348-391)||(28960215-28960258)
chr6 (357-395)||(33274228-33274266)
chr6 (358-395)||(14168997-14169034)
chr6 (359-395)||(4037036-4037072)
chr6 (355-395)||(9951881-9951921)
chr6 (357-395)||(2565358-2565396)
chr6 (361-395)||(6324202-6324236)
chr6 (353-395)||(11307355-11307397)
chr6 (353-395)||(12256756-12256798)
chr6 (357-395)||(14168572-14168610)
chr6 (358-395)||(2565075-2565112)
chr6 (354-395)||(11322304-11322345)
chr6 (354-391)||(20080382-20080419)
chr6 (358-395)||(31740766-31740803)
chr6 (363-395)||(6324380-6324412)
chr6 (355-391)||(15272992-15273028)
[»] chr4 (22 HSPs)
chr4 (357-395)||(2016251-2016289)
chr4 (356-395)||(1186967-1187006)
chr4 (356-395)||(5344265-5344304)
chr4 (360-395)||(12893242-12893277)
chr4 (364-395)||(18961847-18961878)
chr4 (353-391)||(6386723-6386761)
chr4 (361-395)||(9592410-9592444)
chr4 (357-395)||(12640816-12640854)
chr4 (361-395)||(36945513-36945547)
chr4 (358-395)||(11530039-11530076)
chr4 (362-395)||(12892825-12892858)
chr4 (359-392)||(26858342-26858375)
chr4 (362-395)||(29860653-29860686)
chr4 (358-395)||(44120753-44120790)
chr4 (358-395)||(47853973-47854010)
chr4 (358-395)||(49869250-49869287)
chr4 (359-395)||(34362818-34362854)
chr4 (359-395)||(35835774-35835810)
chr4 (359-395)||(44921889-44921925)
chr4 (359-395)||(45289779-45289815)
chr4 (351-395)||(46282750-46282794)
chr4 (363-395)||(51843570-51843602)
[»] scaffold0028 (1 HSPs)
scaffold0028 (358-391)||(32293-32326)
[»] chr7 (18 HSPs)
chr7 (351-395)||(23909885-23909929)
chr7 (356-395)||(34533492-34533531)
chr7 (357-395)||(7380660-7380698)
chr7 (361-395)||(11742937-11742971)
chr7 (357-395)||(18201663-18201701)
chr7 (358-395)||(3925790-3925827)
chr7 (358-395)||(10318888-10318925)
chr7 (358-395)||(35711656-35711693)
chr7 (358-395)||(39142469-39142506)
chr7 (354-391)||(40139522-40139559)
chr7 (358-395)||(43408483-43408520)
chr7 (359-395)||(18852493-18852529)
chr7 (355-391)||(27512796-27512832)
chr7 (359-395)||(29163098-29163134)
chr7 (360-392)||(37991414-37991446)
chr7 (355-395)||(37996011-37996051)
chr7 (359-391)||(40139844-40139876)
chr7 (363-395)||(45480108-45480140)
[»] chr2 (20 HSPs)
chr2 (359-395)||(2755229-2755265)
chr2 (359-395)||(3339165-3339201)
chr2 (359-395)||(32661402-32661438)
chr2 (360-395)||(10741357-10741392)
chr2 (360-395)||(31025874-31025909)
chr2 (360-395)||(41454511-41454546)
chr2 (357-395)||(19889497-19889535)
chr2 (361-395)||(22699456-22699490)
chr2 (361-395)||(34470029-34470063)
chr2 (358-395)||(24205291-24205328)
chr2 (358-395)||(31784249-31784286)
chr2 (358-391)||(36286437-36286470)
chr2 (358-395)||(40711333-40711370)
chr2 (359-395)||(1467087-1467123)
chr2 (363-395)||(12542141-12542173)
chr2 (359-395)||(37343962-37343998)
chr2 (359-395)||(39374098-39374134)
chr2 (359-395)||(40493924-40493960)
chr2 (359-395)||(40938792-40938828)
chr2 (359-395)||(41454821-41454857)
[»] chr8 (12 HSPs)
chr8 (360-395)||(26919995-26920030)
chr8 (360-395)||(31947853-31947888)
chr8 (360-395)||(32498377-32498412)
chr8 (356-395)||(44807354-44807393)
chr8 (357-395)||(17943354-17943392)
chr8 (357-395)||(37639503-37639541)
chr8 (358-395)||(1985566-1985603)
chr8 (358-395)||(6745273-6745310)
chr8 (359-392)||(12278833-12278866)
chr8 (358-395)||(18539294-18539331)
chr8 (358-395)||(23234059-23234096)
chr8 (359-395)||(2321514-2321550)
[»] chr3 (17 HSPs)
chr3 (360-395)||(7857980-7858015)
chr3 (360-395)||(24636349-24636384)
chr3 (360-395)||(46934038-46934073)
chr3 (360-395)||(50725026-50725061)
chr3 (360-395)||(50787789-50787824)
chr3 (360-395)||(54716475-54716510)
chr3 (357-395)||(41223509-41223547)
chr3 (358-392)||(43001907-43001941)
chr3 (359-392)||(5576931-5576964)
chr3 (358-395)||(9153474-9153511)
chr3 (358-395)||(33576688-33576725)
chr3 (358-391)||(53764572-53764605)
chr3 (359-391)||(26600548-26600580)
chr3 (359-395)||(32205126-32205162)
chr3 (359-395)||(50033520-50033556)
chr3 (359-395)||(53531804-53531840)
chr3 (356-392)||(53568288-53568324)
[»] scaffold2010 (1 HSPs)
scaffold2010 (358-395)||(490-527)
[»] scaffold0019 (1 HSPs)
scaffold0019 (358-391)||(122613-122646)
[»] scaffold0182 (1 HSPs)
scaffold0182 (359-395)||(20593-20629)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 9583416 - 9583148
Alignment:
Q  1 tcactagttgatagcattgatggaagactacaagatgtgactgaaactctgcagtattctaaaattgcaaaataattaatgaagaataaaaatcattcat 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9583416 tcactagttgatagcattgatggaagactataagatgtgactgaaactctacagtattctaaaattgcaaaataattaatgaagaataaaaatcatccat 9583317  T
Q  101 cataaaactgtcatccaactcgaggatagcatttttaatgagtaatgattctcttcaattgacaaactagattttagtttatagagttatgcacaaacaa 200  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| |||  |||  | |||||||  || ||||||||||||  | |||||||||| |||    
T  9583316 cataaaactgtcatccaacttgaggatagcatttttaacgagtaaggatcatctctatttgacaacataaattttagtttat--aattatgcacaagcaa 9583219  T
Q  201 atgtcattaatgttaaagatcgataaaacataagtataggaaacgaatagtaaattactagtctttgagta 271  Q
    || |||||||||||||||| | |||||||||||||||||||||  ||||| | ||| |||| |||||||||    
T  9583218 atatcattaatgttaaagacctataaaacataagtataggaaatcaatagcacattgctagcctttgagta 9583148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 15911670 - 15911706
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| ||||||||||||||||||||||||    
T  15911670 aaggcttaattgcacttttggccccctatcttttcaa 15911706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 395
Target Start/End: Original strand, 37696243 - 37696283
Alignment:
Q  355 tttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  37696243 tttaaaagtttaattgtacttttggccccctatcttttcaa 37696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Complemental strand, 7764495 - 7764460
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7764495 aggcttaattgcacttttggccccctatcttttcaa 7764460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Complemental strand, 20224390 - 20224355
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||||||||| |||||||||||||||    
T  20224390 aggcttaattgtacttttggacccctatcttttcaa 20224355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 353 - 395
Target Start/End: Original strand, 52201358 - 52201399
Alignment:
Q  353 aatttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||||||| |||||||| |||||||||||||||    
T  52201358 aatttaaaggcttaattgcacttttgg-cccctatcttttcaa 52201399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 1712367 - 1712404
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  1712367 aaaggcttaattgcacttttgaccccctatcttttcaa 1712404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 8770460 - 8770497
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  8770460 aaaggcttaattgcacttttggacccctatcttttcaa 8770497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 32341808 - 32341771
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  32341808 aaaggcttaattgcacttttggacccctatcttttcaa 32341771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 39427408 - 39427445
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  39427408 aaaggcttaattgcacttttggacccctatcttttcaa 39427445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 47113703 - 47113666
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  47113703 aaaggcttaattgcacttttggacccctatcttttcaa 47113666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 6606534 - 6606569
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||||||||| |||||||||||||||||    
T  6606534 aaggcttaattgtactttt-gccccctatcttttcaa 6606569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 11018717 - 11018681
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  11018717 aaggcttaattgcacttttggacccctatcttttcaa 11018681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 391
Target Start/End: Original strand, 35580736 - 35580768
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttt 391  Q
    |||||||||||| ||||||||||||||||||||    
T  35580736 aaggcttaattgcacttttggccccctatcttt 35580768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 52143480 - 52143444
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  52143480 aaggcttaattgcacttttggacccctatcttttcaa 52143444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 17235134 - 17235170
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||||||||||||||||||||||||||    
T  17235134 aaggcttaattgtacttttggccccctatcttttcaa 17235170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 361 - 395
Target Start/End: Original strand, 25693901 - 25693935
Alignment:
Q  361 ggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||||||||||||||||||||||||    
T  25693901 ggcttaattgtacttttggccccctatcttttcaa 25693935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 8986933 - 8986889
Alignment:
Q  351 aaaatttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||    
T  8986933 aaaagttaaaggcttaattgcacttttggacccctatcttttcaa 8986889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Complemental strand, 20974723 - 20974688
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||||||||| |||||||||||||||    
T  20974723 aggcttaattgtacttttggacccctatcttttcaa 20974688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 395
Target Start/End: Complemental strand, 35307020 - 35306981
Alignment:
Q  356 ttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  35307020 ttaaaggcttaattgcacttttggacccctatcttttcaa 35306981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 42739522 - 42739561
Alignment:
Q  356 ttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  42739522 ttaaaggcttaattgtacttttgaacccctatcttttcaa 42739561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 361 - 395
Target Start/End: Original strand, 6815500 - 6815534
Alignment:
Q  361 ggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||| ||||||||||||||||||||||||    
T  6815500 ggcttaattgcacttttggccccctatcttttcaa 6815534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 358 - 392
Target Start/End: Original strand, 12610241 - 12610275
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatctttt 392  Q
    ||||||||||||| |||||||||||||||||||||    
T  12610241 aaaggcttaattgcacttttggccccctatctttt 12610275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 361 - 395
Target Start/End: Complemental strand, 14648001 - 14647967
Alignment:
Q  361 ggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||||||||| |||||||||||||||    
T  14648001 ggcttaattgtacttttggacccctatcttttcaa 14647967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 34082418 - 34082380
Alignment:
Q  357 taaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  34082418 taaaggcttaattgcacttttggacccctatcttttcaa 34082380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 6815745 - 6815708
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  6815745 aaaggcttaattgcacttttggccctctatcttttcaa 6815708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 392
Target Start/End: Original strand, 10169005 - 10169046
Alignment:
Q  351 aaaatttaaaggcttaattgtacttttggccccctatctttt 392  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  10169005 aaaaattaaaggtttaattgcacttttggccccctatctttt 10169046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 23263142 - 23263179
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  23263142 aaaggcttaattgcacttttggacccctatcttttcaa 23263179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 34606686 - 34606649
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  34606686 aaaggcttaattgcacttttggacccctatcttttcaa 34606649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 43223007 - 43222974
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttt 391  Q
    |||| |||||||||||||||||||||||||||||    
T  43223007 aaagacttaattgtacttttggccccctatcttt 43222974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 2710652 - 2710616
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  2710652 aaggcttaattgcacttttggacccctatcttttcaa 2710616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 363 - 395
Target Start/End: Original strand, 33749249 - 33749281
Alignment:
Q  363 cttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||| ||||||||||||||||||||||||    
T  33749249 cttaattgcacttttggccccctatcttttcaa 33749281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 355 - 395
Target Start/End: Original strand, 37887666 - 37887706
Alignment:
Q  355 tttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||| ||||||||||| ||||||| ||||||||||||||||    
T  37887666 tttataggcttaattgcacttttgaccccctatcttttcaa 37887706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 40687664 - 40687700
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  40687664 aaggcttaattgcacttttggacccctatcttttcaa 40687700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 391
Target Start/End: Original strand, 28960215 - 28960258
Alignment:
Q  348 accaaaatttaaaggcttaattgtacttttggccccctatcttt 391  Q
    |||||||  |||||||||||||||||||||||||||||||||||    
T  28960215 accaaaaaataaaggcttaattgtacttttggccccctatcttt 28960258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 33274228 - 33274266
Alignment:
Q  357 taaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  33274228 taaaggcttaattgcacttttggccccctatcttttcaa 33274266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 14169034 - 14168997
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  14169034 aaaggcttaattgcacttttggccccctatcttttcaa 14168997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 4037036 - 4037072
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| ||||||||||||||||||||||||    
T  4037036 aaggcttaattgcacttttggccccctatcttttcaa 4037072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 395
Target Start/End: Original strand, 9951881 - 9951921
Alignment:
Q  355 tttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  9951881 tttaaaggcttaattgcacttttggccacctatcttttcaa 9951921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 2565396 - 2565358
Alignment:
Q  357 taaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  2565396 taaaggcttaattgcacttttggacccctatcttttcaa 2565358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 361 - 395
Target Start/End: Original strand, 6324202 - 6324236
Alignment:
Q  361 ggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||| ||||||||||||||||||||||||    
T  6324202 ggcttaattgcacttttggccccctatcttttcaa 6324236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 353 - 395
Target Start/End: Complemental strand, 11307397 - 11307355
Alignment:
Q  353 aatttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||| |||||||||||| |||||||||| |||||||||||||    
T  11307397 aatttgaaggcttaattgcacttttggcctcctatcttttcaa 11307355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 353 - 395
Target Start/End: Original strand, 12256756 - 12256798
Alignment:
Q  353 aatttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||| |||||| |||||||| |||||||||||||||    
T  12256756 aatttaaaggcgtaattgcacttttggacccctatcttttcaa 12256798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 14168572 - 14168610
Alignment:
Q  357 taaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  14168572 taaaggcttaattgcacttttggccctctatcttttcaa 14168610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 2565075 - 2565112
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  2565075 aaaggcttaattgcacttttggacccctatcttttcaa 2565112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 395
Target Start/End: Complemental strand, 11322345 - 11322304
Alignment:
Q  354 atttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||| ||||||||||| |||||||| |||||||||||||||    
T  11322345 atttataggcttaattgcacttttggacccctatcttttcaa 11322304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 20080419 - 20080382
Alignment:
Q  354 atttaaaggcttaattgtacttttggccccctatcttt 391  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  20080419 atttataggcttaattgtacttttggacccctatcttt 20080382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 31740766 - 31740803
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  31740766 aaaggcttaattgcacttttggacccctatcttttcaa 31740803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 6324412 - 6324380
Alignment:
Q  363 cttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||| ||||||||||||||||||||||    
T  6324412 cttaattgtatttttggccccctatcttttcaa 6324380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 15272992 - 15273028
Alignment:
Q  355 tttaaaggcttaattgtacttttggccccctatcttt 391  Q
    |||||||||||||||| |||||||| |||||||||||    
T  15272992 tttaaaggcttaattgcacttttggacccctatcttt 15273028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 2016251 - 2016289
Alignment:
Q  357 taaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  2016251 taaaggcttaattgcacttttggccccctatcttttcaa 2016289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 395
Target Start/End: Complemental strand, 1187006 - 1186967
Alignment:
Q  356 ttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  1187006 ttaatggcttaattgcacttttggccccctatcttttcaa 1186967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 5344265 - 5344304
Alignment:
Q  356 ttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  5344265 ttaaaggcttaattgcacttttggacccctatcttttcaa 5344304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Complemental strand, 12893277 - 12893242
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12893277 aggcttaattgcacttttggccccctatcttttcaa 12893242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 395
Target Start/End: Original strand, 18961847 - 18961878
Alignment:
Q  364 ttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||||||||||||||||||||||    
T  18961847 ttaattgtacttttggccccctatcttttcaa 18961878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 353 - 391
Target Start/End: Original strand, 6386723 - 6386761
Alignment:
Q  353 aatttaaaggcttaattgtacttttggccccctatcttt 391  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  6386723 aatttaaaggcttaattgcacttttggacccctatcttt 6386761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 361 - 395
Target Start/End: Complemental strand, 9592444 - 9592410
Alignment:
Q  361 ggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||| ||||||||||||||||||||||||    
T  9592444 ggcttaattgcacttttggccccctatcttttcaa 9592410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 12640816 - 12640854
Alignment:
Q  357 taaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  12640816 taaaggcttaattgcacttttggacccctatcttttcaa 12640854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 361 - 395
Target Start/End: Original strand, 36945513 - 36945547
Alignment:
Q  361 ggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||| ||||||||||||||||||||||||    
T  36945513 ggcttaattgcacttttggccccctatcttttcaa 36945547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 11530076 - 11530039
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  11530076 aaaggcttaattgcacttttggacccctatcttttcaa 11530039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 395
Target Start/End: Original strand, 12892825 - 12892858
Alignment:
Q  362 gcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||| ||||||||||||||||||||||||    
T  12892825 gcttaattgcacttttggccccctatcttttcaa 12892858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 392
Target Start/End: Original strand, 26858342 - 26858375
Alignment:
Q  359 aaggcttaattgtacttttggccccctatctttt 392  Q
    |||||||||||| |||||||||||||||||||||    
T  26858342 aaggcttaattgcacttttggccccctatctttt 26858375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 395
Target Start/End: Original strand, 29860653 - 29860686
Alignment:
Q  362 gcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||| ||||||||||||||||||||||||    
T  29860653 gcttaattgcacttttggccccctatcttttcaa 29860686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 44120753 - 44120790
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  44120753 aaaggtttaattgcacttttggccccctatcttttcaa 44120790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 47853973 - 47854010
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  47853973 aaaggcttaattgcacttttggacccctatcttttcaa 47854010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 49869250 - 49869287
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  49869250 aaaggcttaattgcacttttggctccctatcttttcaa 49869287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 34362818 - 34362854
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  34362818 aaggcttaattgcacttttggacccctatcttttcaa 34362854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 35835774 - 35835810
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  35835774 aaggcttaattgcacttttggacccctatcttttcaa 35835810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 44921925 - 44921889
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  44921925 aaggcttaattgcacttttggacccctatcttttcaa 44921889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 45289815 - 45289779
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  45289815 aaggcttaattgcacttttggacccctatcttttcaa 45289779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 395
Target Start/End: Original strand, 46282750 - 46282794
Alignment:
Q  351 aaaatttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||| |||||||||||| |||||||  |||||||||||||||    
T  46282750 aaaattttaaggcttaattgcacttttgaacccctatcttttcaa 46282794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 51843602 - 51843570
Alignment:
Q  363 cttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||| ||||||||||||||||||||||||    
T  51843602 cttaattgcacttttggccccctatcttttcaa 51843570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 32326 - 32293
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttt 391  Q
    ||||||||||||||||||||||||||||||||||    
T  32326 aaaggcttaattgtacttttggccccctatcttt 32293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 395
Target Start/End: Original strand, 23909885 - 23909929
Alignment:
Q  351 aaaatttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||| |||||||||||||| |||||||| |||||||||||||||    
T  23909885 aaaatataaaggcttaattgcacttttggacccctatcttttcaa 23909929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 395
Target Start/End: Complemental strand, 34533531 - 34533492
Alignment:
Q  356 ttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  34533531 ttaaaggcttaattgcacttttggacccctatcttttcaa 34533492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 7380698 - 7380660
Alignment:
Q  357 taaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  7380698 taaaggtttaattgtacttttggcctcctatcttttcaa 7380660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 361 - 395
Target Start/End: Complemental strand, 11742971 - 11742937
Alignment:
Q  361 ggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||| ||||||||||||||||||||||||    
T  11742971 ggcttaattgcacttttggccccctatcttttcaa 11742937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 18201701 - 18201663
Alignment:
Q  357 taaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  18201701 taaaggcttaattgcacttttggccccctgtcttttcaa 18201663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 3925790 - 3925827
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  3925790 aaaggcttaattgcacttttggacccctatcttttcaa 3925827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 10318888 - 10318925
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  10318888 aaaggcttaattgcacttttggacccctatcttttcaa 10318925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 35711656 - 35711693
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  35711656 aaaggcttaattgcacttttggacccctatcttttcaa 35711693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 39142506 - 39142469
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  39142506 aaaggcttaattgcacttttggtcccctatcttttcaa 39142469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 40139522 - 40139559
Alignment:
Q  354 atttaaaggcttaattgtacttttggccccctatcttt 391  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  40139522 atttaaaggcttaattgcacttttgggcccctatcttt 40139559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 43408520 - 43408483
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  43408520 aaaggcttaattgcacttttggacccctatcttttcaa 43408483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 18852493 - 18852529
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  18852493 aaggcttaattgcacttttggacccctatcttttcaa 18852529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 27512796 - 27512832
Alignment:
Q  355 tttaaaggcttaattgtacttttggccccctatcttt 391  Q
    |||||||||||||||| |||||||| |||||||||||    
T  27512796 tttaaaggcttaattgcacttttggacccctatcttt 27512832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 29163098 - 29163134
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||| |||||||||||||||||    
T  29163098 aaggcttaattgcactttttgccccctatcttttcaa 29163134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 360 - 392
Target Start/End: Original strand, 37991414 - 37991446
Alignment:
Q  360 aggcttaattgtacttttggccccctatctttt 392  Q
    ||||||| |||||||||||||||||||||||||    
T  37991414 aggcttagttgtacttttggccccctatctttt 37991446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 355 - 395
Target Start/End: Original strand, 37996011 - 37996051
Alignment:
Q  355 tttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||| ||||||||||| |||||||| |||||||||||||||    
T  37996011 tttataggcttaattgcacttttggacccctatcttttcaa 37996051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 391
Target Start/End: Complemental strand, 40139876 - 40139844
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttt 391  Q
    |||||||||||| ||||||||||||||||||||    
T  40139876 aaggcttaattgcacttttggccccctatcttt 40139844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 45480140 - 45480108
Alignment:
Q  363 cttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||| ||||||||||||||||||||||||    
T  45480140 cttaattgcacttttggccccctatcttttcaa 45480108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 2755265 - 2755229
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| ||||||||||||||||||||||||    
T  2755265 aaggcttaattgcacttttggccccctatcttttcaa 2755229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 3339201 - 3339165
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| ||||||||||||||||||||||||    
T  3339201 aaggcttaattgcacttttggccccctatcttttcaa 3339165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 32661402 - 32661438
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| ||||||||||||||||||||||||    
T  32661402 aaggcttaattgcacttttggccccctatcttttcaa 32661438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Complemental strand, 10741392 - 10741357
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10741392 aggcttaattgcacttttggccccctatcttttcaa 10741357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 31025874 - 31025909
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31025874 aggcttaattgcacttttggccccctatcttttcaa 31025909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 41454511 - 41454546
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||| ||||||||||||||||||||||||    
T  41454511 aggcttaattgcacttttggccccctatcttttcaa 41454546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 357 - 395
Target Start/End: Complemental strand, 19889535 - 19889497
Alignment:
Q  357 taaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  19889535 taaaggcttaattgcacttttggccccatatcttttcaa 19889497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 361 - 395
Target Start/End: Original strand, 22699456 - 22699490
Alignment:
Q  361 ggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||||||||| |||||||||||||||    
T  22699456 ggcttaattgtacttttggacccctatcttttcaa 22699490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 361 - 395
Target Start/End: Original strand, 34470029 - 34470063
Alignment:
Q  361 ggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||| ||||||||||||||||||||||||    
T  34470029 ggcttaattgcacttttggccccctatcttttcaa 34470063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 24205291 - 24205328
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  24205291 aaaggcttaattgcacttttggacccctatcttttcaa 24205328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 31784249 - 31784286
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  31784249 aaaggcttaattgcacttttggacccctatcttttcaa 31784286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 36286470 - 36286437
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttt 391  Q
    ||||||||||||| ||||||||||||||||||||    
T  36286470 aaaggcttaattgcacttttggccccctatcttt 36286437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 40711333 - 40711370
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  40711333 aaaggcttaattgtatttttggacccctatcttttcaa 40711370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 1467123 - 1467087
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  1467123 aaggcttaattgcacttttggacccctatcttttcaa 1467087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 363 - 395
Target Start/End: Original strand, 12542141 - 12542173
Alignment:
Q  363 cttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||| ||||||||||||||||||||||||    
T  12542141 cttaattgcacttttggccccctatcttttcaa 12542173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 37343998 - 37343962
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||||| |||||||||||||    
T  37343998 aaggcttaattgcacttttggcctcctatcttttcaa 37343962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 39374098 - 39374134
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  39374098 aaggcttaattgcacttttggccctctatcttttcaa 39374134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 40493960 - 40493924
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  40493960 aaggcttaattgcacttttggacccctatcttttcaa 40493924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 40938792 - 40938828
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  40938792 aaggcttaattgcacttttgaccccctatcttttcaa 40938828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 41454857 - 41454821
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| || |||||||||||||||||||||    
T  41454857 aaggcttaattgcacgtttggccccctatcttttcaa 41454821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Complemental strand, 26920030 - 26919995
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||| ||||||||||||||||||||||||    
T  26920030 aggcttaattgcacttttggccccctatcttttcaa 26919995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 31947853 - 31947888
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31947853 aggcttaattgcacttttggccccctatcttttcaa 31947888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 32498377 - 32498412
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||| ||||||||||||||||||||||||    
T  32498377 aggcttaattgcacttttggccccctatcttttcaa 32498412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 395
Target Start/End: Complemental strand, 44807393 - 44807354
Alignment:
Q  356 ttaaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  44807393 ttaaaggcttaattgcacttttgaccccctatcttttcaa 44807354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 17943354 - 17943392
Alignment:
Q  357 taaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  17943354 taaaggcttaattgcacttttggacccctatcttttcaa 17943392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 37639503 - 37639541
Alignment:
Q  357 taaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  37639503 taaaggcttaattgcacttttggacccctatcttttcaa 37639541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 1985566 - 1985603
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||||||||||| || ||||||||||||    
T  1985566 aaaggcttaattgtacttttggacctctatcttttcaa 1985603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 6745310 - 6745273
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  6745310 aaaggcttaattgcacttttggacccctatcttttcaa 6745273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 392
Target Start/End: Original strand, 12278833 - 12278866
Alignment:
Q  359 aaggcttaattgtacttttggccccctatctttt 392  Q
    ||||||||||||||||||||||||||||| ||||    
T  12278833 aaggcttaattgtacttttggccccctatgtttt 12278866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 18539331 - 18539294
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||||||||||  |||||||||||||||    
T  18539331 aaaggcttaattgtacttttgatcccctatcttttcaa 18539294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 23234096 - 23234059
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  23234096 aaaggcttaattgcacttttggacccctatcttttcaa 23234059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 2321514 - 2321550
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  2321514 aaggcttaattgcacttttggacccctatcttttcaa 2321550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 7857980 - 7858015
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||||||||| |||||||||||||||    
T  7857980 aggcttaattgtacttttggacccctatcttttcaa 7858015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 24636349 - 24636384
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||||||||| |||||||||||||||    
T  24636349 aggcttaattgtacttttggacccctatcttttcaa 24636384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 46934038 - 46934073
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||| ||||||||||||||||||||||||    
T  46934038 aggcttaattgcacttttggccccctatcttttcaa 46934073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Complemental strand, 50725061 - 50725026
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||| ||||||||||||||||||||||||    
T  50725061 aggcttaattgcacttttggccccctatcttttcaa 50725026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 50787789 - 50787824
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||| ||||||||||||||||||||||||    
T  50787789 aggcttaattgcacttttggccccctatcttttcaa 50787824  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 54716475 - 54716510
Alignment:
Q  360 aggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||| ||||||||||||||||||||||||    
T  54716475 aggcttaattgcacttttggccccctatcttttcaa 54716510  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 41223509 - 41223547
Alignment:
Q  357 taaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  41223509 taaaggcttaattgcacttttggacccctatcttttcaa 41223547  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 358 - 392
Target Start/End: Complemental strand, 43001941 - 43001907
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatctttt 392  Q
    ||||||||||||| |||||||||||||||||||||    
T  43001941 aaaggcttaattgcacttttggccccctatctttt 43001907  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 392
Target Start/End: Original strand, 5576931 - 5576964
Alignment:
Q  359 aaggcttaattgtacttttggccccctatctttt 392  Q
    ||||||||||||||||||||| ||||||||||||    
T  5576931 aaggcttaattgtacttttggacccctatctttt 5576964  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 9153474 - 9153511
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  9153474 aaaggcttaattgcacttttggacccctatcttttcaa 9153511  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 33576725 - 33576688
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  33576725 aaaggcttaattgcacttttggacccctatcttttcaa 33576688  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 391
Target Start/End: Original strand, 53764572 - 53764605
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttt 391  Q
    ||||||||||||| ||||||||||||||||||||    
T  53764572 aaaggcttaattgcacttttggccccctatcttt 53764605  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 391
Target Start/End: Complemental strand, 26600580 - 26600548
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttt 391  Q
    ||||||||||||||||||||||||| |||||||    
T  26600580 aaggcttaattgtacttttggccccttatcttt 26600548  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 32205162 - 32205126
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  32205162 aaggcttaattgcacttttggacccctatcttttcaa 32205126  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 50033556 - 50033520
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  50033556 aaggcttaattgcacttttggacccctatcttttcaa 50033520  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 53531804 - 53531840
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  53531804 aaggcttaattgcacttttggacccctatcttttcaa 53531840  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 53568288 - 53568324
Alignment:
Q  356 ttaaaggcttaattgtacttttggccccctatctttt 392  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  53568288 ttaaaggcttaattgcacttttggcctcctatctttt 53568324  T

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Target: scaffold2010 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2010
Description:

Target: scaffold2010; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 490 - 527
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttttcaa 395  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  490 aaaggcttaattgcacttttgaccccctatcttttcaa 527  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 122646 - 122613
Alignment:
Q  358 aaaggcttaattgtacttttggccccctatcttt 391  Q
    ||||||||||||| ||||||||||||||||||||    
T  122646 aaaggcttaattgcacttttggccccctatcttt 122613  T

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Target: scaffold0182 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 20593 - 20629
Alignment:
Q  359 aaggcttaattgtacttttggccccctatcttttcaa 395  Q
    |||||||||||| |||||||| |||||||||||||||    
T  20593 aaggcttaattgcacttttggacccctatcttttcaa 20629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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