View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_low_14 (Length: 394)
Name: NF17754_low_14
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 35789275 - 35788888
Alignment:
| Q |
18 |
atatcatggtctacgaaccctggatatcatcatggaactaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaagagga---------- |
107 |
Q |
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| T |
35789275 |
atatcatggtctacgaaccctggatatgatcatggaactaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaagaggaggagggagag |
35789176 |
T |
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| Q |
108 |
--tggaggggaaattatccttatgtcgacaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgcatgaaagctaggacacgta |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
35789175 |
gatggaggggaaattatccttatgtcgacaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactacaagaaagctaggacacgta |
35789076 |
T |
|
| Q |
206 |
tgaagcttaggatataagttatgttatctaggta---ttatatatgtgatgttatattagatacctttgtggtgatcgatgatacaatgtatatattagt |
302 |
Q |
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| T |
35789075 |
tgaagcttaggatataagttatgttatctaggtattattatatatgtgatgttatattagatacctttgtggtgatcgatgatacaatgtatatattagt |
35788976 |
T |
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| Q |
303 |
tctgctattattgaaatatgaatatgcaactacaattaaatgatgctatattg-tttgattcttgtcttcttgattatctctgctcct |
389 |
Q |
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| T |
35788975 |
tatgctattattgaaatatgaatatgcaactacaattaaatgatgctacattgttttgattcttatcttcttgattatctttgctcct |
35788888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 35798529 - 35798445
Alignment:
| Q |
297 |
attagttctgctattattgaaatatgaatatgcaactacaattaaatgatgctatattgtttgattcttgtcttcttgattatct |
381 |
Q |
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| T |
35798529 |
attagtactgatattattgaaatatgaatatgaaactacaattaaatgatgttatattgtttgattcttgtcttcttgattatct |
35798445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 35765944 - 35765781
Alignment:
| Q |
21 |
tcatggtctacgaaccctggatatcatcatggaactaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaagaggatggaggggaaatt |
120 |
Q |
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|||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||| |||||| ||||| | |||||||| |||||||||||| |
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| T |
35765944 |
tcatggtctaagaaccctggatatcatcatggcactagtgactatcagatgaatagaggaagaggaagagg---tggaggaa------ggaggggaaatt |
35765854 |
T |
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| Q |
121 |
atccttatgtcgacaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgcatgaaag |
193 |
Q |
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| T |
35765853 |
ttgcttatgcagacaaggtaactactcctagtgcatggtaaatgaagatcagatgctttggactgcaagaaag |
35765781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 35798897 - 35798817
Alignment:
| Q |
24 |
tggtctacgaaccctggatatcatcatggaactaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaagagga |
107 |
Q |
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| T |
35798897 |
tggtctaagaaccctggatatcatcatggcactaatgagtatcagatgaatagaggaagaaga---agaaatggaggaagagga |
35798817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 35760373 - 35760281
Alignment:
| Q |
97 |
gaggaagaggatggaggggaaattatccttatgtcgacaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgcatg |
189 |
Q |
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| T |
35760373 |
gaggaggaggaaggaggggaaatttttcttatgtggaaaaggtagctactcctggtgcatggtaaatgaagatcaagggccttggactgcatg |
35760281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 35798680 - 35798635
Alignment:
| Q |
214 |
aggatataagttatgttatctaggtattatatatgtgatgttatat |
259 |
Q |
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| T |
35798680 |
aggatataagttatgttttctaggtattatatatgtgatgttatat |
35798635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 35760461 - 35760394
Alignment:
| Q |
24 |
tggtctacgaaccctggatatcatcatggaactaatgagtatcagatgaatagtggaagaagaagaag |
91 |
Q |
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| T |
35760461 |
tggtctaataaccccggacattatcatggtactaatgaatatcagatgaatagaggaagaagaagaag |
35760394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 369
Target Start/End: Complemental strand, 35760078 - 35760005
Alignment:
| Q |
297 |
attagttctgctattattgaaatatgaa-tatgcaactacaattaaatgatgctatattgtttgattcttgtct |
369 |
Q |
| |
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|||||| ||| |||||||||||||| || ||||||| ||||||||||||| |||| | ||||| |||||||||| |
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| T |
35760078 |
attagtactggtattattgaaatataaaatatgcaattacaattaaatgaagctaaactgttttattcttgtct |
35760005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 35755312 - 35755244
Alignment:
| Q |
21 |
tcatggtctacgaaccctggatatcatcatggaactaatgagtatcagatgaatagtggaagaagaaga |
89 |
Q |
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|||||||||| || ||||| | ||||| |||| | ||||||||||||||||||||| |||||| ||||| |
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| T |
35755312 |
tcatggtctaagagccctgaaaatcattatggcaataatgagtatcagatgaatagaggaagaggaaga |
35755244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 35785347 - 35785293
Alignment:
| Q |
133 |
acaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgca |
187 |
Q |
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||||||||||||||||| |||||||| |||||| ||||||| ||||| |||||| |
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| T |
35785347 |
acaaggtagctactcctactgcatggtaaatgaagatcaaataccttgtactgca |
35785293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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