View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_low_16 (Length: 380)
Name: NF17754_low_16
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 21 - 357
Target Start/End: Complemental strand, 24908020 - 24907684
Alignment:
| Q |
21 |
agcacagaccaaccatgaaacaagttctacaaatgctttccagacaagttcatcttaatgagaaggcattgactgagcctggaatatacagatggaatgc |
120 |
Q |
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| T |
24908020 |
agcacagaccaaccatgaaacaagttctacaaatgctttccagacaagttcatcttaatgagaaggcattgactgagcctggaatatacagatggaatgc |
24907921 |
T |
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| Q |
121 |
ttccgcaaagacgagtggttctttgaatgagatttcatcgtcatctcaagtaatcaagcacaaaaaatatgaaaatcgatgtcaaacctctacgcaattt |
220 |
Q |
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| T |
24907920 |
ttccgcaaagacgagtggttctttgaatgagatttcatcgtcatctcaagtaatcaagcacaaaaaatatgaaaatcgatgtcaaacctctacgcaattt |
24907821 |
T |
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| Q |
221 |
agcggtacagatattgtgacagagatgtttcctagatgatggttactatttacaaatgatgttggttccatgtttctggtatatgatgtatttatcattt |
320 |
Q |
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| T |
24907820 |
agcggtacagatattgtgacagagatgtttcctagatgatggttactatttacaaatgatgttggttccatgtttctggtatatgatgtatttatcgttt |
24907721 |
T |
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| Q |
321 |
agttgttaggatacatgtggttccaaagggaatcatg |
357 |
Q |
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| T |
24907720 |
agttattaggatacatgtggttccaaagggaatcatg |
24907684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 35 - 360
Target Start/End: Complemental strand, 24890303 - 24889979
Alignment:
| Q |
35 |
atgaaacaagttctacaaatgctttccagacaagttcatcttaatgagaaggcattgactgagcctggaatatacagatggaatgcttccgcaaagacga |
134 |
Q |
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| T |
24890303 |
atgaaacatgttctacaaatgctttccaaacaagttcat--tatggagaaggcattgactgagcatggaatatacaaatagaatgcctccgcaaagacga |
24890206 |
T |
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| Q |
135 |
gtggttctttgaatgagatttcatcgtcatctcaagtaatcaagcacaaaaaatatgaaaatcgatgtcaaacctctacgcaatttagcggtacagatat |
234 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24890205 |
gtggttctttgaatgagatgtcatcgtcatctcaagtaatcaagcacaaaaaatatgaaaatcgacatcaaacctctacgcaatttagcggtacagatat |
24890106 |
T |
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| Q |
235 |
tgtgacagagatgtttcctagatgatggttactatttacaaatgatgttggttccatgtttctggtatatgatgtatttatc-atttagttgttaggata |
333 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| || |||||| ||||||||||||| ||| |||||||||||| |
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| T |
24890105 |
tgtgacagagatgtttcctagatgatggttactatttgcaaatgatgttgggttcatacttttggtatgtgatgtatttatcttttttgttgttaggata |
24890006 |
T |
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| Q |
334 |
catgtggttccaaagggaatcatgggt |
360 |
Q |
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| T |
24890005 |
catgtggttccaaagggaataatgggt |
24889979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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