View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_low_17 (Length: 338)
Name: NF17754_low_17
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 49921417 - 49921723
Alignment:
| Q |
14 |
agacctagcatgaaaagaaaactatgtatagattcaaaaattgtgaactttccttattggttgtaatatgtaaaccaaaatctattcaaataaaatctcc |
113 |
Q |
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| T |
49921417 |
agacctagcatgaaaagaaa-ctatgtatagattcaaaaattgtgaactttccttattggttgtaatatgtaaaccaaaatctattcaaacaaaatctcc |
49921515 |
T |
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| Q |
114 |
tcttatttggagtaaactttccttattgttttcactaagatatattgtgagatcactaaccaaacaaaagcccctcttacttgggccataggctgttgat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49921516 |
tcttatttggagtaaactttccttattgttttcacta-gataaattgtgagatcactaaccaaacaaaagcccctcttacttgggacataggctgttgat |
49921614 |
T |
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| Q |
214 |
gatcaagtgaaaagtaatttgtggattaaacttaagattgcaaggggcggaggcctcctcattattttccattaaggcttgattaggcttacaaaaatca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49921615 |
gatcaagtgaaaagtaatttgtggattaaacttaagattgcaaggggcggaggcgtcctcattattttccattaaggcttgattaggcttacaaaaatca |
49921714 |
T |
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| Q |
314 |
aatgataca |
322 |
Q |
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||||||||| |
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| T |
49921715 |
aatgataca |
49921723 |
T |
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