View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_low_18 (Length: 324)
Name: NF17754_low_18
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 15023463 - 15023154
Alignment:
| Q |
16 |
caattacaaacatgtagaagaacaaaataagacatgacattggtaagagcttcattctgtgaagtattttggaaatttcaacacaatgaaattattggca |
115 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15023463 |
caattacaaacacttagaagaacaaaataagacatgacattggtaagagcttcattctttgaagtattttggaaatttcaacacaatgaaattattggca |
15023364 |
T |
|
| Q |
116 |
atcactgagatatatataattgaactagacacttgtattatgatg--------------ggagatttaggtgatatttataatgcattgtaattgatatt |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15023363 |
atcactgagatatatataattgaactagacacttgtatcatgatgaatgcattacaatgggagatttaggtgatatttataatgcattgtaattgatatt |
15023264 |
T |
|
| Q |
202 |
cccacttgtaatagtgaagactcagctcattaaagtcttccacttttgtctttaaggtgaagacttagacttattattttggttttgatcagaaacatga |
301 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15023263 |
cccacttgtaatagtgaagacttagctcattaaagtctttcacttttgtctttaaggtgaagacttagacttattattgtggttttgatcagaaacatga |
15023164 |
T |
|
| Q |
302 |
ggttggagta |
311 |
Q |
| |
|
|||||||||| |
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|
| T |
15023163 |
ggttggagta |
15023154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 15009346 - 15009037
Alignment:
| Q |
16 |
caattacaaacatgtagaagaacaaaataagacatgacattggtaagagcttcattctgtgaagtattttggaaatttcaacacaatgaaattattggca |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15009346 |
caattacaaacacatagaagaacaaaataagacatggcattggtaagagcttcattctttgaagtattttggaaatttcaacacaatgaaattattggca |
15009247 |
T |
|
| Q |
116 |
atcactgagatatatataattgaactagacacttgtattatgatg--------------ggagatttaggtgatatttataatgcattgtaattgatatt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15009246 |
atcactgagatatatataattgaactagacacttgtatcatgatgaatgcattacaatgggagatttaggtgatatttataatgcattgtaattgatatt |
15009147 |
T |
|
| Q |
202 |
cccacttgtaatagtgaagactcagctcattaaagtcttccacttttgtctttaaggtgaagacttagacttattattttggttttgatcagaaacatga |
301 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15009146 |
cccacttgtaatagtgaagacttagctcattaaagtctttcacttttgtctttaaggtgaagacttagacttattattgtggttttgatcagaaacatga |
15009047 |
T |
|
| Q |
302 |
ggttggagta |
311 |
Q |
| |
|
|||||||||| |
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|
| T |
15009046 |
ggttggagta |
15009037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 15030444 - 15030237
Alignment:
| Q |
16 |
caattacaaacatgtagaagaacaaaataagacatgacattggtaagagcttcattctgtgaagtattttggaaatttcaacacaatgaaattattggca |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
15030444 |
caattacaaacacatagaagaacaaaataagacatggcattggtaagagcttcattctttgaagtattttggaaatttcaacagaatgaaattattggca |
15030345 |
T |
|
| Q |
116 |
atcactgagatatatataattgaactagacacttgtattatgatgggagatttaggtgatatttataatgcattgtaattgatattcccacttgtaatag |
215 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15030344 |
agcactgagatatatataattgaactagacacttgtattatgatgggagatttaggtgatatttataatgcattgtaattgatattcccacttgtaatag |
15030245 |
T |
|
| Q |
216 |
tgaagact |
223 |
Q |
| |
|
|||||||| |
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|
| T |
15030244 |
tgaagact |
15030237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 15000734 - 15000518
Alignment:
| Q |
16 |
caattacaaacatgtagaagaacaaaataagacatgacattggtaagagcttcattctgtgaagtattttggaaatttcaacacaatgaaattattggca |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
15000734 |
caattacaaacacatagaagaacaaaataagacacgacattggtaatagcttatttctttgaagcattttggaaatttcaacacaatgaaattattggca |
15000635 |
T |
|
| Q |
116 |
atcactgagatatatataattgaactagacacttgtattatg--------------atgggagatttaggtgatatttataatgcattgtaattgatatt |
201 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||| || |
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|
| T |
15000634 |
tttactgaaatatatataattgaactagacacttatattatgatgaatgcattataatgggagatgtaggtgatatttataatgctttgtaattgatgtt |
15000535 |
T |
|
| Q |
202 |
cccacttgtaatagtga |
218 |
Q |
| |
|
|||| |||| ||||||| |
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|
| T |
15000534 |
cccatttgtcatagtga |
15000518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 194 - 307
Target Start/End: Complemental strand, 15015431 - 15015317
Alignment:
| Q |
194 |
ttgatattcccacttgtaatagtgaagactcag-ctcattaaagtcttccacttttgtctttaaggtgaagacttagacttattattttggttttgatca |
292 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
15015431 |
ttgatattcccatttgtaacagtgaagagtcaggctcatcaaagtcttccacttttgtctttaaggtgaagacttggacttattagggtggttttgatca |
15015332 |
T |
|
| Q |
293 |
gaaacatgaggttgg |
307 |
Q |
| |
|
||||||||||||||| |
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|
| T |
15015331 |
gaaacatgaggttgg |
15015317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 227 - 311
Target Start/End: Complemental strand, 15000420 - 15000336
Alignment:
| Q |
227 |
ctcattaaagtcttccacttttgtctttaaggtgaagacttagacttattattttggttttgatcagaaacatgaggttggagta |
311 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
15000420 |
ctcattgaagtcttccacttttgtcttcaagttgaagacttggacttattatggtggttttgatcagaaacatgaggttggagta |
15000336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 14501896 - 14501806
Alignment:
| Q |
16 |
caattacaaacatgtagaagaacaaaataagacatgacattggtaagagcttcattctgtgaagtattttggaaatttcaacacaatgaaa |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||| || | ||||| |||||| |||||| |||||||||||| |
|
|
| T |
14501896 |
caattacaaacacatagaagaacaaaataagacacgacattggtaagagctttatcttctgaagcattttgaaaatttgaacacaatgaaa |
14501806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 15030239 - 15030174
Alignment:
| Q |
243 |
acttttgtctttaaggtgaagacttagacttattattttggttttgatcagaaacatgaggttggagta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
15030239 |
acttttgtctttaaggtgaagacttagact---tattgtggttttgatcagaaacatgaggttggagta |
15030174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 14501694 - 14501625
Alignment:
| Q |
242 |
cacttttgtctttaaggtgaagacttagacttattattttggttttgatcagaaacatgaggttggagta |
311 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
14501694 |
cacttttgtctttagtatgaagactgagacttattatggtggttttgatcagaaacacgaggttggagta |
14501625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 14535074 - 14535143
Alignment:
| Q |
242 |
cacttttgtctttaaggtgaagacttagacttattattttggttttgatcagaaacatgaggttggagta |
311 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
14535074 |
cacttttgtctttagtatgaagactgagacttattatggtggttttgatcagaaacacgaggttggagta |
14535143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 15000486 - 15000425
Alignment:
| Q |
227 |
ctcattaaagtcttccacttttgtctttaaggtgaagacttagacttattattttggttttg |
288 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||| |
|
|
| T |
15000486 |
ctcattaaagtcttccacttttgtcttaaagttgaaaacttagacttattatggtggttttg |
15000425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 15035219 - 15035091
Alignment:
| Q |
16 |
caattacaaacatgtagaagaacaaaataagacatgacattggtaagagcttcattctgtgaagtattttggaaatttcaacacaatgaaattattggca |
115 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||||| ||||||||||||| |||||| || ||||| |||| ||| | ||| | ||||||| |||||||| |
|
|
| T |
15035219 |
caattacatacacatagaagaacaaaagaagacacgacattggtaagaacttcatcctctgaagcattt--gaa--tacaataaaatgaaagtattggca |
15035124 |
T |
|
| Q |
116 |
atcactgagatatatataattgaactagacactt |
149 |
Q |
| |
|
|||||||| ||| ||||||||||| ||| |||| |
|
|
| T |
15035123 |
atcactgatgtat-tataattgaacaagagactt |
15035091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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