View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_low_2 (Length: 724)
Name: NF17754_low_2
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 447 - 707
Target Start/End: Complemental strand, 36504795 - 36504533
Alignment:
| Q |
447 |
tgtcttataagttacttagaaggaaa-aagggaaggggttggagcctccttttgaaatatagagttacaatcatctcaatctttcaaaataaacgagatt |
545 |
Q |
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| T |
36504795 |
tgtcttataagttaattagaaggaaataagggaaggggttggagcctccttttgaaatatagagttacaatcatctcaatctttcaaaataaacgagatt |
36504696 |
T |
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| Q |
546 |
tcatttgaatagagaaatacataagagagatttaaatggaag-nnnnnnnncgttaatgcattatctcttctttgtgtatttctttcactatttatctta |
644 |
Q |
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| T |
36504695 |
tcatttgaatagagaaatacataagagagatttaaatggaagaaaaaaaaatgttaatgcgttatctcttctttatgtatttctttcactatttatctta |
36504596 |
T |
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| Q |
645 |
acaaatgtagagaatataatataatgccaaggacatgccttgcattttgtaatctattgctag |
707 |
Q |
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| T |
36504595 |
acaaatgtagagaatataatataatgccaaggacatgccttgcattttgtaatctattgctag |
36504533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 55 - 249
Target Start/End: Complemental strand, 36505208 - 36505003
Alignment:
| Q |
55 |
tcctacttgaaatccaatacatgatcaaccaaatgaagtatgataaaattgcataaacgaaactctaaatcgcaaaaagaagnnnnnnnn---------c |
145 |
Q |
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| T |
36505208 |
tcctacttgaaatccaatacatgatcaacaaaatgaagtatgataaaattgcataaacaaaactctaaatcgcaaaaagaagaaaaaagaaaaaaaaaac |
36505109 |
T |
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| Q |
146 |
gcataaatggggcggaatggcaatgaggatttatagata--acttttgaaatggaagaaggcttgctctacataaatggggcggaatggctgcaaaaatg |
243 |
Q |
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| T |
36505108 |
gcataaatggggcggaatggcaatgaggatttatagatataacttttgaaatggaagaaggcttgctcaacataaatggggcggaatggctgcaaaaatg |
36505009 |
T |
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| Q |
244 |
agttcg |
249 |
Q |
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| T |
36505008 |
agttcg |
36505003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 314 - 409
Target Start/End: Complemental strand, 36504938 - 36504843
Alignment:
| Q |
314 |
gggtttaggattaggagagaatgtaatgtaagcaaacaattaaaaacttaatttcaatttagagatatttttaatcatttcatagtgtaattcgag |
409 |
Q |
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| T |
36504938 |
gggtttaggattaggagagaatgtaatgtaagcacacaattaaaaatttaatttcaatttagagatatttttagtcatttcagagtgtaattcgag |
36504843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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