View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_low_21 (Length: 287)
Name: NF17754_low_21
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 11749733 - 11749468
Alignment:
| Q |
12 |
cctccactcagcaatgtagcttctataacccaacaacaacatggtcacggtttcgaatataacaacatcatcgttatcagtgacgtcactgatgacgatg |
111 |
Q |
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| T |
11749733 |
cctccactcagcaatgtagcttctataacccaacaacaacatggccacggtttcgaatataacaacatcatcgttatcagtgacgtcactgatgacgatg |
11749634 |
T |
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| Q |
112 |
attagaggaaagaaatgatagagaatcaaaatccattgcctgattatatcgttagcaatgaaagtggaactgaaagtgatgatgatga---------tga |
202 |
Q |
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| T |
11749633 |
atcagaggaaagaaatgatagagaatcaaaatccattgcttggttatatcgttagcaatgaaagtggaactgaaagtgatgatgatgatgatgatgatga |
11749534 |
T |
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| Q |
203 |
taggaacagacagttttacaatggcgttgcaaagagatatgcatcattcattcacattcaacaaat |
268 |
Q |
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| T |
11749533 |
taggaacaaacagttttacgatggcgttgcaaagagatatgcatcattcattcccattcaacaaat |
11749468 |
T |
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