View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_low_26 (Length: 260)
Name: NF17754_low_26
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 39280530 - 39280280
Alignment:
| Q |
1 |
ccttggctgacatgctattcacaacttcagaagcttcctcgaagtgactctgcttacagaaaccatctatcaatatagtgtatgtgatcacattggcctc |
100 |
Q |
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| T |
39280530 |
ccttggctgacatgctattcacaactttagaagcttcctcgaagtgaccctgcttacagaaaccatctatcaatatagtgtatgtgatcacattgggctc |
39280431 |
T |
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| Q |
101 |
aaaacctttcttgaccatctcatctaagaattcaagagaagagaccagatgcccctttttgcaaagcccgtcgatcattatgttaaacgtgaaggcatca |
200 |
Q |
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| T |
39280430 |
aaaacctttcttgaccatctcatctaagaattcaagagcagagaccagatacccctttttgcaaagcccatcgatcattatgttaaacgtgaaggcatca |
39280331 |
T |
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| Q |
201 |
ggctcaaaaccggcaattaccatgtttttgtacaaaagatcctttgcttct |
251 |
Q |
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| T |
39280330 |
ggctcaaaaccggcaattaccatgtttttgtacaaaagatccttggcttct |
39280280 |
T |
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Back To:
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Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 54 - 251
Target Start/End: Original strand, 17349847 - 17350044
Alignment:
| Q |
54 |
ttacagaaaccatctatcaatatagtgtatgtgatcacattggcctcaaaacctttcttgaccatctcatctaagaattcaagagaagagaccagatgcc |
153 |
Q |
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| T |
17349847 |
ttacagaaaccatttatcaatatagtgtatgtgatcacatttggctcaaaacctttctctaccatctcatttaagaattcaagagcagagaccaaatacc |
17349946 |
T |
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| Q |
154 |
cctttttgcaaagcccgtcgatcattatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttgtacaaaagatcctttgcttct |
251 |
Q |
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| T |
17349947 |
ccttcttgcaaagtccatcgatcattatgttaaacatgaaggcatcaggctcaaagccggcaattaccatgttttggtacagaagatccttggcttct |
17350044 |
T |
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