View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_low_27 (Length: 257)
Name: NF17754_low_27
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 63 - 243
Target Start/End: Original strand, 23013037 - 23013217
Alignment:
| Q |
63 |
tttagtttgtttatacaggtttgaagtttagatttctagctacattacttagattataactttctcaattttcaaaagacatgctattccccttattttt |
162 |
Q |
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| T |
23013037 |
tttagtttgtttatgcaggttttaagtttagatttctagctacattacttagattataactttctcaattttcaaaagacatgctattccccttattttt |
23013136 |
T |
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| Q |
163 |
agtaaaggctattatgtatgttaatactttagtttcacattttccctttgccaaacacaggctgcatccatatccatctct |
243 |
Q |
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| T |
23013137 |
agtaaaggctattatgtatgttaatactttagttttacattttccctttgccaaacacaggctgcatccatatccatctct |
23013217 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 9835854 - 9835938
Alignment:
| Q |
56 |
ttgatcatttagtttgtttatacaggtttgaagtttagatttctagctacattacttagattataactttctcaattttcaaaag |
140 |
Q |
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| T |
9835854 |
ttgatcatttactttgcttacactggtttgaagtttagactgatagctacattacatagattacaattctctcatttttcgaaag |
9835938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 9846732 - 9846816
Alignment:
| Q |
56 |
ttgatcatttagtttgtttatacaggtttgaagtttagatttctagctacattacttagattataactttctcaattttcaaaag |
140 |
Q |
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||||||||||| |||| ||| || ||||||||||||||| | |||||||||||| ||||||| || | ||||| ||||| |||| |
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| T |
9846732 |
ttgatcatttactttgcttacactggtttgaagtttagactgatagctacattacatagattacaattctctcatttttcgaaag |
9846816 |
T |
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