View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_low_29 (Length: 250)
Name: NF17754_low_29
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 8436068 - 8435824
Alignment:
| Q |
1 |
caatttaatgctagttagctagtgtgtttttaaataatgtattgctcaacaaattctgtctactctttctgcattctttgatattatccttttattcatt |
100 |
Q |
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| T |
8436068 |
caatttaatgctagttagctagtgtgtttttaaataatgtattgctcaacaaattctgtctactctttctgcattctttgatttgatccttttattcatt |
8435969 |
T |
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| Q |
101 |
ggtttgaaattggtttttaattttact-gactgaaatattttgtattaaatatatggtagaactactgtgagaaaggaaatttattataaacaac-aaaa |
198 |
Q |
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| T |
8435968 |
tatttgaaattggtttttaattttagtatattgaaatattttgtattaaagatatggtagaactactgtgagaaaggaaatttattataaccaacaaaaa |
8435869 |
T |
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| Q |
199 |
aaccatatattggttaattacggtgccggttgaaaatattcttgg |
243 |
Q |
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| T |
8435868 |
aaccatatattggttaattacggtgccggttgaaaatatttttgg |
8435824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 8442400 - 8442336
Alignment:
| Q |
59 |
tctactctttctgcattctttgatattatccttttattcattggtttgaaattggtttttaattt |
123 |
Q |
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| T |
8442400 |
tctattctttctgcattctttgattttatccttttattcatttgtttgaaattggtttttaattt |
8442336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 8442265 - 8442210
Alignment:
| Q |
129 |
actgaaatattttgtattaaatatatggtagaactactgtgagaaaggaaatttat |
184 |
Q |
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| T |
8442265 |
actgaaatattttgtattaaagatagggtagaaataccatgagaaaggaaatttat |
8442210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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