View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_low_3 (Length: 711)
Name: NF17754_low_3
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 310 - 702
Target Start/End: Original strand, 14194719 - 14195106
Alignment:
| Q |
310 |
ctctttatattacagatcgcactttaaaaccatcgttttgatgtta--tgttttatttatttatgctatttgcaagggtgttaacatggtcatcaatctc |
407 |
Q |
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| T |
14194719 |
ctctttatattgcaaaccgcaatttaaaaccatcgttttcatattacatgtttt-tttatttatgctatt------ggtgttgacattgacaccaatctc |
14194811 |
T |
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| Q |
408 |
aatttttctgccacataagccattgtacaaatttgactacaggcctctttgagaacatgaagcacaatcaaaagaaatatgcctccaaaagcaacaactc |
507 |
Q |
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| T |
14194812 |
aatttttctaccacataagccattgcacaaatttgactacatgcctctttgagaacatgaagcaaaatcaaaagaaatatgcctccaaaagcaacaactc |
14194911 |
T |
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| Q |
508 |
tcaacattactctttctggtggtgactttgcaatcaaataaacacaatccaaacttatcaaaatccaactaaacctttccatcaacactttaatcatgga |
607 |
Q |
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| T |
14194912 |
tcaacattactttttctggtggtgactttgcaatcaaataaacacaatccaaacttatcaaaatccaactaaacctttccatcaacactttaatcatgga |
14195011 |
T |
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| Q |
608 |
cacaaatttccccacattttctccaaagattttacatataatcctcaaacaaagaacactaacaacaaaaaatgttgtcattgaccaacctttgt |
702 |
Q |
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| T |
14195012 |
cacaaatttccccacattttcaccaaagattttacatataatcctcaaacaaagaacactaacaacaaaaaatgttgtcattgaccagcctttgt |
14195106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 312 - 711
Target Start/End: Original strand, 14181559 - 14181955
Alignment:
| Q |
312 |
ctttatattacagatcgcactttaaaaccatcgttttgatgttatgt----tttatttatttatgctatttgcaagggtgttaacatggtcatcaatctc |
407 |
Q |
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| T |
14181559 |
ctttatattgcaaaacgcaatttaaaaccatcgttttaatattatatacattttttttatttatgctatt------ggtgttgacattgacaccaatctc |
14181652 |
T |
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| Q |
408 |
aatttttctgccacataagccattgtacaaatttgactacaggcctctttgagaacatgaagcacaatcaaaagaaatatgcctccaaaagcaacaactc |
507 |
Q |
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| T |
14181653 |
aatttttctgccacataagccattgcatgaatttgactacatgcctctttaagaacatgaagcacaatcaaaagaaatatgcatccaaaagcaacaactc |
14181752 |
T |
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| Q |
508 |
tcaacattactctttctggtggtgactttgcaatcaaataaacacaatccaaacttatcaaaatccaactaaacctttccatcaacactttaatcatgga |
607 |
Q |
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| T |
14181753 |
tcaacattactctttctggtggtgactttgcaatcaaataaacacaatccaaacttatcaaaatccaactaaacctttccatcaacactttaatcatgga |
14181852 |
T |
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| Q |
608 |
cacaaatttccccacattttctccaaagattttacatataatcctcaaacaaagaacactaacaacaaaaaatgttgtcattgaccaacctttgttactt |
707 |
Q |
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| T |
14181853 |
cacaaatttccccacattttctccaaagattgtacatataatcctcaaacaaagaacactaccaacaaaaaatgttgtcattgaccaacctttg-tactt |
14181951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 14194422 - 14194638
Alignment:
| Q |
20 |
tgacttacttctaaaagctgacctgtgttgtatatacgtgatgtacaaatcaaacagaactatgtcaagaaaaaacaaagacttaattcgcataaaagaa |
119 |
Q |
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| T |
14194422 |
tgacttacttctaaaagctgacctgtgttgtatatacgtgatgtacaaaccaaacagaactatgtcaagaaaaaacaaacacttaatttgcataaaagaa |
14194521 |
T |
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| Q |
120 |
agaatgtcaatatcatctaaaacagcagcttaggattaatttacaagttacaacaaaaataagttattgatatccttaaatccattttggttttcaacat |
219 |
Q |
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| T |
14194522 |
agaatgtcaatatcatctaaaacagcagcttaggattaatttacaagttacaacaaaaataagctattgatatccttaaatccattttggttttcatcgt |
14194621 |
T |
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| Q |
220 |
cgttttaagttgtgatc |
236 |
Q |
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| T |
14194622 |
cgttttaaatcgtgatc |
14194638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 14181378 - 14181476
Alignment:
| Q |
137 |
taaaacagcagcttaggattaatttacaagttacaacaaaaataagttattgatatccttaaatccattttggttttcaacatcgttttaagttgtgat |
235 |
Q |
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| T |
14181378 |
taaaacagcagcttatgattaatttacaagttacaataaaaataagctattgatatccttaaatccattttggttttcatcatcattttaaattgtgat |
14181476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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