View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17754_low_31 (Length: 244)
Name: NF17754_low_31
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 25636448 - 25636488
Alignment:
| Q |
76 |
tgacaatcaaatcactgttgcttttagtcatattctagaac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25636448 |
tgacaatcaaatcactgttgcttttagtcatattctagaac |
25636488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 25616559 - 25616592
Alignment:
| Q |
194 |
tgctccttaaactcacaccctcgctctccatctt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
25616559 |
tgctccttaaactcacaccctcgctctccatctt |
25616592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 25628132 - 25628161
Alignment:
| Q |
198 |
ccttaaactcacaccctcgctctccatctt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
25628132 |
ccttaaactcacaccctcgctctccatctt |
25628161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University