View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17754_low_37 (Length: 206)

Name: NF17754_low_37

Description: NF17754

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17754_low_37

[»] chr4 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 173; E-Value: 3e-93

Query Start/End: Original strand, 11 - 187

Target Start/End: Original strand, 47615576 - 47615752

Alignment:

Q	11	atcatcagaagctctaacaacagcagcttgtttcgaacagtaaagcgcatcagtgttatgactcatacacgcgatgcaaccgttatccgaaaagtttctt	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	47615576	atcatcagaagctctaacaacagcagcttgtttcgaacagtaaagcgcatcagtgttatgactcatacacgcgatgcaaccgttgtccgaaaagtttctt	47615675	T

Q	111	gcaacagaagcatctaaggcctgatgatactgtttggtaatttcaactcgaccacctaagccggcccccagtgtctc	187	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	47615676	gcaacagaagcatctaaggcctgatgatactgtttggtaatttcaactcgaccacctaagccggcccccagtgtctc	47615752	T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 58 - 106

Target Start/End: Original strand, 36369046 - 36369094

Alignment:

Q	58	catcagtgttatgactcatacacgcgatgcaaccgttatccgaaaagtt	106	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\| \|\|\|\|\|\|\|\|
T	36369046	catcagtgttatgacacatacacgcgatgcatccattgtcggaaaagtt	36369094	T

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