View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17754_low_4 (Length: 638)

Name: NF17754_low_4
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17754_low_4
NF17754_low_4
[»] chr7 (5 HSPs)
chr7 (17-626)||(36886949-36887558)
chr7 (190-243)||(36598327-36598380)
chr7 (191-249)||(5276278-5276336)
chr7 (190-240)||(24909834-24909884)
chr7 (191-260)||(28165138-28165207)
[»] chr1 (6 HSPs)
chr1 (190-260)||(27807161-27807231)
chr1 (190-260)||(31517694-31517764)
chr1 (537-616)||(22557140-22557219)
chr1 (17-86)||(22557640-22557709)
chr1 (193-245)||(4481979-4482031)
chr1 (190-230)||(37842339-37842379)
[»] chr5 (3 HSPs)
chr5 (191-260)||(4619754-4619823)
chr5 (190-243)||(37611186-37611239)
chr5 (190-243)||(37787916-37787969)
[»] chr4 (4 HSPs)
chr4 (191-260)||(2996620-2996689)
chr4 (190-245)||(21043204-21043259)
chr4 (191-260)||(50742790-50742859)
chr4 (190-230)||(1137758-1137798)
[»] chr3 (5 HSPs)
chr3 (190-230)||(48048966-48049006)
chr3 (193-260)||(2304225-2304292)
chr3 (191-259)||(2175804-2175872)
chr3 (197-245)||(21574543-21574591)
chr3 (190-230)||(45541617-45541657)
[»] chr6 (2 HSPs)
chr6 (191-230)||(769185-769224)
chr6 (191-260)||(27595521-27595590)
[»] chr2 (3 HSPs)
chr2 (190-260)||(787378-787448)
chr2 (190-260)||(43456661-43456731)
chr2 (193-245)||(1494415-1494467)
[»] chr8 (1 HSPs)
chr8 (161-218)||(25097392-25097449)
[»] scaffold0608 (1 HSPs)
scaffold0608 (193-245)||(9606-9658)


Alignment Details
Target: chr7 (Bit Score: 598; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 17 - 626
Target Start/End: Complemental strand, 36887558 - 36886949
Alignment:
Q  17 aggatggaacggtagtgatccttgtgaggagtcttggacgggtgttgcttgttctgagtcgtcggttataagcatgtaatgtaccaacctcaatcatcat 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36887558 aggatggaacgggagtgatccttgtgaggagtcttggacgggtgttgcttgttctgagtcgtcggttataagcatgtaatgtaccaacctcaatcatcat 36887459  T
Q  117 atttcttacttagacgttgttttgataaacagcttaattaaggactgtttttatatgttatcctcaagagcttctgaaaacagcttatgaacatgtcatg 216  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36887458 atttcttacttagacattgttttgataaacagcttaattaaggactgtttttatatgttatcctcaagagcttctgaaaacagcttatgaacatgtcatg 36887359  T
Q  217 agatggtttcataacctctctcaaacagttttataagtgcttattataccagtaattaagcttaagtaagtcaattcagttagaccctaagatcagaatg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36887358 agatggtttcataacctctctcaaacagttttataagtgcttattataccagtaattaagcttaagtaagtcaattcagttagaccctaagatcagaatg 36887259  T
Q  317 atattgataattggtatccgtgttctatgtcaaaatgcagaaacattcaagggttagtcctcactgggagtctatgcaggctttataatctccgaaattt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36887258 atattgataattggtatccgtgttctatgtcaaaatgcagaaacattcaagggttagacctcactgggagtctatgcaggctttataatctccgaaattt 36887159  T
Q  417 gaaacagctgtgagtgtttttgattttgcaaggcattagtattagattcttatatcaggatatgtgaatttcaagttatgctattaattaacttgtttcc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36887158 gaaacagctgtgagtgtttttgattttgcaaggcattagtattagattcttatatcaggatatgtgaatttcaagttatgctattaattaacttgtttcc 36887059  T
Q  517 atatttttggtttttgtagggatgtcagttctaataacatagtgggcgaaatgccgtttggtttaccccccaatgtcacacatatgtaaggcaactgttc 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36887058 atatttttggtttttgtagggatgtcagttctaataacatagtgggcgaaatgccgtttggtttaccccccaatgtcacacatatgtaaggcaactgttc 36886959  T
Q  617 ttctcatttt 626  Q
    ||||||||||    
T  36886958 ttctcatttt 36886949  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 36598380 - 36598327
Alignment:
Q  190 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaaca 243  Q
    |||||||||||||||||||||||||| ||||| || ||||| ||||||||||||    
T  36598380 ctgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaaca 36598327  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 5276278 - 5276336
Alignment:
Q  191 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagtttta 249  Q
    |||||||| || ||||| ||||||| ||||| || ||||| ||||||||||||||||||    
T  5276278 tgaaaacaactaatgaagatgtcataagatgtttgcataagctctctcaaacagtttta 5276336  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 24909834 - 24909884
Alignment:
Q  190 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaa 240  Q
    |||||||||||||||||||||||||| || || ||||||||  ||||||||    
T  24909834 ctgaaaacagcttatgaacatgtcattagttgatttcataagttctctcaa 24909884  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 28165138 - 28165207
Alignment:
Q  191 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 260  Q
    ||||||||||||||||||| ||| |||| || || ||||| || ||||||| ||| | ||||||||||||    
T  28165138 tgaaaacagcttatgaacaggtcttgagctgtttccataagctatctcaaagagtctcataagtgcttat 28165207  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 27807161 - 27807231
Alignment:
Q  190 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 260  Q
    ||||| |||||||||||||| ||||| || || |||||||| |||||||||||||| ||| || |||||||    
T  27807161 ctgaagacagcttatgaacacgtcatcagctgctttcataagctctctcaaacagtcttacaaatgcttat 27807231  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 31517764 - 31517694
Alignment:
Q  190 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 260  Q
    ||||||||||||||||||||||||||||| || ||| ||||  |||| |||||||| | | ||||||||||    
T  31517764 ctgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgcttat 31517694  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 616
Target Start/End: Complemental strand, 22557219 - 22557140
Alignment:
Q  537 gatgtcagttctaataacatagtgggcgaaatgccgtttggtttaccccccaatgtcacacatatgtaaggcaactgttc 616  Q
    ||||||||||| || | |||| |||| ||||| || | ||| ||||||||||||| |||||||||||||| | |||||||    
T  22557219 gatgtcagttccaacagcataatgggtgaaattccatatggattaccccccaatgccacacatatgtaagcctactgttc 22557140  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 22557709 - 22557640
Alignment:
Q  17 aggatggaacggtagtgatccttgtgaggagtcttggacgggtgttgcttgttctgagtcgtcggttata 86  Q
    ||||||||| |||  |||||||||||||||||||||||| || || ||||||| || ||| || ||||||    
T  22557709 aggatggaatggtgctgatccttgtgaggagtcttggacaggagtggcttgttttgggtcctcagttata 22557640  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 4481979 - 4482031
Alignment:
Q  193 aaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 245  Q
    |||||||||||||||||||| || || || ||||||||  |||||||||||||    
T  4481979 aaaacagcttatgaacatgtaataagttgttttcataagttctctcaaacagt 4482031  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 37842379 - 37842339
Alignment:
Q  190 ctgaaaacagcttatgaacatgtcatgagatggtttcataa 230  Q
    |||||||| ||||||||||||||||| ||||| ||||||||    
T  37842379 ctgaaaactgcttatgaacatgtcattagatgttttcataa 37842339  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 4619754 - 4619823
Alignment:
Q  191 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 260  Q
    ||||| ||||||||||||||||||| || || |||||||| ||||| |||||||| ||  ||||||||||    
T  4619754 tgaaaccagcttatgaacatgtcattagttgttttcataagctctcccaaacagtgttgcaagtgcttat 4619823  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 37611239 - 37611186
Alignment:
Q  190 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaaca 243  Q
    |||||||||||||||||||||||||  || || |||||||| ||||||||||||    
T  37611239 ctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaaca 37611186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 37787969 - 37787916
Alignment:
Q  190 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaaca 243  Q
    |||||||||||||||||||||||||  || || |||||||| ||||||||||||    
T  37787969 ctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaaca 37787916  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 2996620 - 2996689
Alignment:
Q  191 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 260  Q
    |||||| |||||||| ||||||||| || || |||||||| |||||||||||||| | | ||||||||||    
T  2996620 tgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttat 2996689  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 21043259 - 21043204
Alignment:
Q  190 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 245  Q
    ||||||||||||||||||| |||||| || || || ||||||||||| ||||||||    
T  21043259 ctgaaaacagcttatgaacgtgtcataagctgtttccataacctctcccaaacagt 21043204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 50742859 - 50742790
Alignment:
Q  191 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 260  Q
    |||||||||  ||||||||||||||||  || ||||||||  ||||||||||||| | | ||||||||||    
T  50742859 tgaaaacagggtatgaacatgtcatgaactgttttcataagttctctcaaacagtctaacaagtgcttat 50742790  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 1137758 - 1137798
Alignment:
Q  190 ctgaaaacagcttatgaacatgtcatgagatggtttcataa 230  Q
    ||||||||| |||||||||||||||| ||||| ||||||||    
T  1137758 ctgaaaacaacttatgaacatgtcataagatgttttcataa 1137798  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 48049006 - 48048966
Alignment:
Q  190 ctgaaaacagcttatgaacatgtcatgagatggtttcataa 230  Q
    |||||||||||||||| |||||||||||| |||||||||||    
T  48049006 ctgaaaacagcttatggacatgtcatgagttggtttcataa 48048966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 2304292 - 2304225
Alignment:
Q  193 aaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 260  Q
    ||||||||||||||||||||||| || || ||||||||  ||||||||| ||||| | ||||| ||||    
T  2304292 aaaacagcttatgaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttat 2304225  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 2175872 - 2175804
Alignment:
Q  191 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgctta 259  Q
    |||||||||||||  |||||||||| || || |||||||| || ||||||| ||| ||| |||||||||    
T  2175872 tgaaaacagcttacaaacatgtcataagttgttttcataaactatctcaaatagtcttacaagtgctta 2175804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 21574543 - 21574591
Alignment:
Q  197 cagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 245  Q
    ||||||||||||||||||| || || |||||||| ||||| ||||||||    
T  21574543 cagcttatgaacatgtcataagttgttttcataagctctcccaaacagt 21574591  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 45541617 - 45541657
Alignment:
Q  190 ctgaaaacagcttatgaacatgtcatgagatggtttcataa 230  Q
    |||||||||||||||||||||||||| || || ||||||||    
T  45541617 ctgaaaacagcttatgaacatgtcataagctgttttcataa 45541657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 769185 - 769224
Alignment:
Q  191 tgaaaacagcttatgaacatgtcatgagatggtttcataa 230  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  769185 tgaaaacagcttatgaacatgtcataagatgttttcataa 769224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 27595590 - 27595521
Alignment:
Q  191 tgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 260  Q
    |||||| |||||||||||||||||| || || || |||||  |||| |||||||| | ||||||||||||    
T  27595590 tgaaaatagcttatgaacatgtcataagttgtttccataaattctcccaaacagtctcataagtgcttat 27595521  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 787378 - 787448
Alignment:
Q  190 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 260  Q
    |||||||||||||||| ||||||||| || || ||||||||  |||| |||||||| | | ||||||||||    
T  787378 ctgaaaacagcttatggacatgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttat 787448  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 43456731 - 43456661
Alignment:
Q  190 ctgaaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagttttataagtgcttat 260  Q
    |||||||||| ||||| |||||||||||| || ||||| || |||| ||||||||| ||| ||||| ||||    
T  43456731 ctgaaaacagtttatggacatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttat 43456661  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 1494467 - 1494415
Alignment:
Q  193 aaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 245  Q
    ||||||| ||||| ||||||||| || || |||||||| ||||||||||||||    
T  1494467 aaaacagtttatggacatgtcataagctgttttcataagctctctcaaacagt 1494415  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 25097392 - 25097449
Alignment:
Q  161 ctgtttttatatgttatcctcaagagcttctgaaaacagcttatgaacatgtcatgag 218  Q
    ||||||| ||| | ||||||  ||||||| ||||||| ||||||||||||||||||||    
T  25097392 ctgttttcataagctatcctggagagcttatgaaaactgcttatgaacatgtcatgag 25097449  T

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Target: scaffold0608 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 9658 - 9606
Alignment:
Q  193 aaaacagcttatgaacatgtcatgagatggtttcataacctctctcaaacagt 245  Q
    |||||||||||||||||||| || || || ||||||||  |||||||||||||    
T  9658 aaaacagcttatgaacatgtaataagttgttttcataagttctctcaaacagt 9606  T

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