View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17754_low_7 (Length: 504)
Name: NF17754_low_7
Description: NF17754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17754_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 26576224 - 26576520
Alignment:
| Q |
5 |
ggtctaaaaacaatgatcaaaggtaacaaattatattttaatatgtgatctttactaaatttaaatgatcaattgagtgaacaaaaggaacaaacacgac |
104 |
Q |
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| T |
26576224 |
ggtctaaaaacaatgatcaaaggtaacaaattatattttaatatgtgatctttactaaatttaaatgatcaattgagtgaacaaaaggaacaaacacgac |
26576323 |
T |
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| Q |
105 |
acatcgatataatcaagagaaatttaataatgatttt--ttaaatgacttcatatgccaatatataagtgcaacaaactataaagtggtatatttgttac |
202 |
Q |
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| T |
26576324 |
acatcgatataatcaagagaaatttaataatgattttttttaaatgacttcatatgccaatatataagtgcaacaaactataaagtggtctatttgttac |
26576423 |
T |
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| Q |
203 |
atgcaaaggagaagaaatatggcaatacttcttaagtttgtttatattatgatcatatatctttttgtagttcttgttgtagttgaaggctactgta |
299 |
Q |
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| T |
26576424 |
atgcaaaggagaagaaacatggcaatacttcttaagtttgtttatattatgatcatatatctttttgtagttcttgttgtagttgaaggctactgta |
26576520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 37 - 302
Target Start/End: Original strand, 26570697 - 26570981
Alignment:
| Q |
37 |
atattttaatatgtgatctttactaaatttaaatgatcaattgagtgaacaaaaggaacaaacacg--acacatcgatataatcaagagaaatttaataa |
134 |
Q |
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| T |
26570697 |
atattttaatatgtgacctttactaaatataagtgatcaattgagtgaa-aaaaggaacaagcatataacacatcgatataatcaagagaaatttaataa |
26570795 |
T |
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| Q |
135 |
tgatt-------ttttaaatgactt-catatgccaatatataagtgcaacaaactataaagtggta-----------tatttgttacatgcaaaggagaa |
215 |
Q |
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| T |
26570796 |
tgattattatttttttaaatggttttcacatgccaatata-aagtgctaaaaaataaaaagtggtcaaacaattatctatttgttacacacaaaggagaa |
26570894 |
T |
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| Q |
216 |
gaaatatggcaatacttcttaagtttgtttatattatgatcatatatctttttgtagttcttgttgtagttgaaggctactgtatgc |
302 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| |||||| |
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| T |
26570895 |
gaaatatggcatcaattcttaagtttgtttatattatgatcatatatctttctgtacttcttgttgtcattgaaggctaccgtatgc |
26570981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 380 - 483
Target Start/End: Original strand, 26576601 - 26576704
Alignment:
| Q |
380 |
ggcttacattacagcggtttacggatgtaattacgacagagattgtccacctagttgtaccaaaccaggttgtccggatagttgtacctatcctcatgtt |
479 |
Q |
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| T |
26576601 |
ggcttacattacagcggtttacggatgtaatgacgacacagattgtccacctagttgtaccacacgaggttgtccggatagttgtgcctatcctcatgtt |
26576700 |
T |
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| Q |
480 |
ctga |
483 |
Q |
| |
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|||| |
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|
| T |
26576701 |
ctga |
26576704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 94 - 302
Target Start/End: Original strand, 26584215 - 26584439
Alignment:
| Q |
94 |
acaaacacgacacatcgatataatcaagagaaatttaataatgattttttaaatgac-----ttcatatgccaatatataagtgcaacaaactataaagt |
188 |
Q |
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| T |
26584215 |
acaaacacgacacatcgatataatcaagagacattaaattatgattatttaaaaaaaagggtttcataaggcaatatataagtgctacaaactataaagt |
26584314 |
T |
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| Q |
189 |
ggta-----------tatttgttacatgcaaaggagaagaaatatggcaatacttcttaagtttgtttatattatgatcatatatctttttgtagttctt |
277 |
Q |
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||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26584315 |
ggtcaaacaattatctatttgttacatgcaaaagagaagaaatatggctgcaattcttaagtttgtttatattatgatcatatatctttttgtacttctt |
26584414 |
T |
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| Q |
278 |
gttgtagttgaaggctactgtatgc |
302 |
Q |
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|||| |||| |||| || ||||||| |
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| T |
26584415 |
gttgcagttaaaggttattgtatgc |
26584439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 2449149 - 2449104
Alignment:
| Q |
39 |
attttaatatgtgatctttactaaatttaaatgatcaattgagtga |
84 |
Q |
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|||||||| |||| ||||||||||| |||||||||||||| ||||| |
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| T |
2449149 |
attttaatgtgtggtctttactaaagttaaatgatcaattaagtga |
2449104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 1102261 - 1102299
Alignment:
| Q |
94 |
acaaacacgacacatcgatataatcaagagaaatttaat |
132 |
Q |
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| T |
1102261 |
acaaacacgacacatggatataatcaagagatatttaat |
1102299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 1128219 - 1128292
Alignment:
| Q |
195 |
tttgttacatgcaaaggagaagaaatatggcaatacttcttaagtttgtttatattatgatcatatatcttttt |
268 |
Q |
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|||||||||| ||||||||||||| ||| | | | |||| ||||||| |||| |||||||||||| ||||||| |
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| T |
1128219 |
tttgttacatctaaaggagaagaaacatgactacaattctcaagtttgcttatgttatgatcatatgtcttttt |
1128292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 7421434 - 7421374
Alignment:
| Q |
207 |
aaaggagaagaaatatggcaatacttcttaagtttgtttatattatgatcatatatctttt |
267 |
Q |
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|||| |||||||| ||||| || |||| || |||||||||||||||||||||| |||||| |
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| T |
7421434 |
aaagaagaagaaacatggctgtaattctcaaatttgtttatattatgatcatatttctttt |
7421374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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