View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17755_high_10 (Length: 583)
Name: NF17755_high_10
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17755_high_10 |
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| [»] scaffold0187 (4 HSPs) |
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Alignment Details
Target: scaffold0187 (Bit Score: 534; Significance: 0; HSPs: 4)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 11 - 568
Target Start/End: Original strand, 1505 - 2062
Alignment:
| Q |
11 |
cacagatataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaataatgttctttgtaaaagactatatta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1505 |
cacagatataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaataatgttctttgtaaaagactatatta |
1604 |
T |
|
| Q |
111 |
tatataccagtaatctttctgattttatatattatcgatgatccatcatccaccatgattgaatgaacatcattcagtcattgactattccttctgtcac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1605 |
tatataccagtaatctttctgattttatatattatcgatgatccatcatccaccatgattgaatgaacatcattcagtcattgactattccttctgtcac |
1704 |
T |
|
| Q |
211 |
aagtcaccatatacagccaataatgtgcctacgtcttcgagtacatagctacttcagtttctttgtaatatcagtgaaaaattagggtttatagtctaca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1705 |
aagtcaccatatacagccaataatgtgcctacgtcttcgagtacatagctacttcagtttctttgtaatatcagtgaaaaattagggtttatagtctaca |
1804 |
T |
|
| Q |
311 |
ccttgtatttaaatgctacggttcagattacaaaattacccttaaatggtacccgcttgagccaaggccaaagtcaggtttcatggcctctgcccgttca |
410 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
1805 |
ccttgtatttaaatactacggttcagattacaaaattacccttaaatgatacccgcttgagccaaggccaaagtcaggtttcacggcctctgccccttca |
1904 |
T |
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| Q |
411 |
accctgcccactttcaaagtacccgagtcatagtcaacacaatgattaattatgaagtttggccaattgtacctacgcctctaatgtcaaagggatcatt |
510 |
Q |
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| T |
1905 |
accctgcccactttcaaagtacctgagtcatagtcaacacaatgattaattatgaagtttggccatttgtacctacgcctctaatgtcaaagggatcatt |
2004 |
T |
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| Q |
511 |
gtggtttttctattatgcaatgtttagggttacaaactacaaattgtgattcaatact |
568 |
Q |
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| T |
2005 |
gtggtttttctattatgcaatgtttagggttacaaactacaaattgtgattcaatact |
2062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 8707 - 8861
Alignment:
| Q |
17 |
tataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaataatgttctttgtaaaagactatattatatata |
116 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8707 |
tataaaggtgggtctaatgcagaatgtttaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagac-----tatatata |
8801 |
T |
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| Q |
117 |
ccagtaatctttctgattttatatattatcgatgatccatcatccaccatgattgaatga |
176 |
Q |
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||| |||||||||||||||||| |||| || ||||||||||| ||||||| ||||||||| |
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| T |
8802 |
ccaataatctttctgattttatgtattttccatgatccatcagccaccataattgaatga |
8861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 19035 - 19189
Alignment:
| Q |
17 |
tataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaataatgttctttgtaaaagactatattatatata |
116 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19035 |
tataaaggtgggtctaatgcagaatgtttaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagac-----tatatata |
19129 |
T |
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| Q |
117 |
ccagtaatctttctgattttatatattatcgatgatccatcatccaccatgattgaatga |
176 |
Q |
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||| |||||||||||||||||| |||| || ||||||||||| ||||||| ||||||||| |
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| T |
19130 |
ccaataatctttctgattttatgtattttccatgatccatcagccaccataattgaatga |
19189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 29945 - 30060
Alignment:
| Q |
17 |
tataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaataatgttctttgtaaaagactatattatatata |
116 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
29945 |
tataaaggtgggactaatgcagaatgtttaagctaaggctacactattttatttctcactcatccaataatgttccttgtaaaagac-----tatatata |
30039 |
T |
|
| Q |
117 |
ccagtaatctttctgatttta |
137 |
Q |
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|| |||||||||||||||||| |
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| T |
30040 |
ccggtaatctttctgatttta |
30060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 37865949 - 37865812
Alignment:
| Q |
17 |
tataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaataatgttctttgtaaaagactatattatatata |
116 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37865949 |
tataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagact-----atatata |
37865855 |
T |
|
| Q |
117 |
ccagtaatctttctgattttatatattatcgatgatccatcat |
159 |
Q |
| |
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||| |||||||||||||||||| ||| |||||||||||||||| |
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| T |
37865854 |
ccaataatctttctgattttatgtatgatcgatgatccatcat |
37865812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 37909132 - 37909017
Alignment:
| Q |
17 |
tataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaataatgttctttgtaaaagactatattatatata |
116 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
37909132 |
tataaaggtgggactaatgcagaatgtttaagctaaggctacactattttatttctcactcatccaataatgttccttgtaaaagact-----atatata |
37909038 |
T |
|
| Q |
117 |
ccagtaatctttctgatttta |
137 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
37909037 |
ccggtaatctttctgatttta |
37909017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 37879868 - 37879683
Alignment:
| Q |
17 |
tataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaataatgttctttgtaaaagactatattatatata |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||||| || ||||| |
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| T |
37879868 |
tataaaggtgggtttaatgcagaatgtttaagctaatgctactctattttatttctcattcattcaagtatgttctttgtaaaagac-----tacatata |
37879774 |
T |
|
| Q |
117 |
ccagtaatctttctgattttatatat-----tatcgatgatccatcatccaccatgattgaatgaacatcattcagtcattgactattcct |
202 |
Q |
| |
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| | ||||||| ||| ||||| ||| || ||||||| ||||||||||| |||||||||| |||||| ||| ||||||||||||| |
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| T |
37879773 |
cttgcaatctttttgagtttatgtatgttcacttccatgatccgtcatccaccataattgaatgaatatcatttagttattgactattcct |
37879683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 37916321 - 37916240
Alignment:
| Q |
17 |
tataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaataatgttctttgtaa |
98 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||| ||||||| ||||| |
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| T |
37916321 |
tataaaggtgggtttaatgcagaatgtttaggctaaggctactctattttatttctcattcattcaattatgttctatgtaa |
37916240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 560
Target Start/End: Complemental strand, 37864998 - 37864954
Alignment:
| Q |
516 |
ttttctattatgcaatgtttagggttacaaactacaaattgtgat |
560 |
Q |
| |
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|||||||||||| |||||||||| ||||||| || |||||||||| |
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|
| T |
37864998 |
ttttctattatgtaatgtttaggattacaaaatataaattgtgat |
37864954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 351
Target Start/End: Original strand, 4314211 - 4314289
Alignment:
| Q |
273 |
ttgtaatatcagtgaaaaattagggtttatagtctacaccttgtatttaaatgctacggttcagattacaaaattaccc |
351 |
Q |
| |
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||||| |||||| |||| ||| ||||||| | | || | ||||||||||||| ||||||| |||||||||| ||||||| |
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| T |
4314211 |
ttgtattatcagcgaaagatttgggtttacaatgtagaacttgtatttaaatactacggtccagattacaatattaccc |
4314289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 349
Target Start/End: Complemental strand, 14298037 - 14297971
Alignment:
| Q |
283 |
agtgaaaaattagggtttatagtctacaccttgtatttaaatgctacggttcagattacaaaattac |
349 |
Q |
| |
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||||||| ||||| ||||| ||| |||| ||||||||||||| |||||||||| | || |||||||| |
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| T |
14298037 |
agtgaaagattagagtttacagtatacaacttgtatttaaatactacggttcaaagtagaaaattac |
14297971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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