View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17755_high_13 (Length: 568)

Name: NF17755_high_13
Description: NF17755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17755_high_13
NF17755_high_13
[»] chr3 (5 HSPs)
chr3 (167-552)||(36272466-36272851)
chr3 (21-77)||(36272941-36272997)
chr3 (408-449)||(8039822-8039863)
chr3 (408-446)||(16192740-16192778)
chr3 (408-449)||(16789043-16789084)
[»] chr5 (6 HSPs)
chr5 (170-369)||(37040928-37041127)
chr5 (411-449)||(21814295-21814333)
chr5 (458-500)||(31084392-31084434)
chr5 (408-449)||(3966534-3966575)
chr5 (408-453)||(32766926-32766971)
chr5 (408-449)||(37328831-37328872)
[»] chr8 (3 HSPs)
chr8 (176-343)||(41915313-41915480)
chr8 (412-446)||(29447479-29447513)
chr8 (408-449)||(14634128-14634169)
[»] chr4 (3 HSPs)
chr4 (170-261)||(28582391-28582482)
chr4 (458-504)||(29205532-29205578)
chr4 (412-449)||(19500845-19500882)
[»] chr2 (2 HSPs)
chr2 (408-449)||(35056899-35056940)
chr2 (411-447)||(18054792-18054828)
[»] chr1 (6 HSPs)
chr1 (408-449)||(44482261-44482302)
chr1 (167-259)||(39419538-39419630)
chr1 (409-443)||(38503352-38503386)
chr1 (408-449)||(25361917-25361958)
chr1 (408-449)||(34371744-34371785)
chr1 (408-440)||(31511976-31512008)
[»] chr7 (1 HSPs)
chr7 (408-442)||(17307924-17307958)
[»] chr6 (1 HSPs)
chr6 (411-449)||(16488577-16488615)


Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 167 - 552
Target Start/End: Complemental strand, 36272851 - 36272466
Alignment:
Q  167 gttggagggtactatgatgcaggtgatcatgtgaaatttggtttaccaatggcatttactgtcacaatgttgtcatggagtgctattgagtttaggcaag 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36272851 gttggagggtactatgatgcaggtgatcatgtgaaatttggtttaccaatggcatttactgtcacaatgttgtcatggagtgttattgagtttaggcaag 36272752  T
Q  267 aaattgttgaagctggtgaacttggtcatgtaatggaagcaattaaatggggaactgattatctcatcaaagctcatactagcccaaatgtgttgtgggc 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36272751 aaattgttgaagctggtgaacttggtcatgtaatggaagcaattaaatggggaactgattatttcatcaaagctcatactagcccaaatgtgttgtgggc 36272652  T
Q  367 agaggtatattaaagtcttttttgaattgatttatttgagtattcagtgtaattatatgtgttggtgtcctgtcggtgtcggaaacgtgttcgacacctg 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| |||||||||    
T  36272651 agaggtatattaaagtcttttttgaattgatttatttgagtattcagtgtaattatatctgttggtgtcctgttggtgtcggacacgtgtccgacacctg 36272552  T
Q  467 ttcgacactgggacatgcctaatgcgaggagtgttcgtatttcatgtgagannnnnnnataaaagttatgataaacagctagtaac 552  Q
    |||||||||| ||||||||||||||||||||||  ||| ||||||||||||       |||||||||||| |||||||||||||||    
T  36272551 ttcgacactgagacatgcctaatgcgaggagtgaccgtgtttcatgtgagatttttttataaaagttatggtaaacagctagtaac 36272466  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 36272997 - 36272941
Alignment:
Q  21 ctggtcttacagatggtttagaacaaggggtgggatcaaaatcataacttttttcac 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36272997 ctggtcttacagatggtttagaacaaggggtgggatcaaaatcataacttttttcac 36272941  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 8039863 - 8039822
Alignment:
Q  408 attcagtgtaattatatgtgttggtgtcctgtcggtgtcgga 449  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  8039863 attcagtgtaattatatgtgtcggtgtcgtgtcggtgtcgga 8039822  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 446
Target Start/End: Complemental strand, 16192778 - 16192740
Alignment:
Q  408 attcagtgtaattatatgtgttggtgtcctgtcggtgtc 446  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  16192778 attcagtgtaattatatgtgttgatgtcgtgtcggtgtc 16192740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 16789043 - 16789084
Alignment:
Q  408 attcagtgtaattatatgtgttggtgtcctgtcggtgtcgga 449  Q
    |||||||||||||||| ||||||||||| |||| ||||||||    
T  16789043 attcagtgtaattataagtgttggtgtcgtgtcagtgtcgga 16789084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 170 - 369
Target Start/End: Original strand, 37040928 - 37041127
Alignment:
Q  170 ggagggtactatgatgcaggtgatcatgtgaaatttggtttaccaatggcatttactgtcacaatgttgtcatggagtgctattgagtttaggcaagaaa 269  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| | |||||| ||||||| || | |  ||||||||    
T  37040928 ggagggtattatgatgcaggtgatcatgtaaaatttggtttaccaatggcatttactgtgacaatgctttcatggggtgctatagaatatttgcaagaaa 37041027  T
Q  270 ttgttgaagctggtgaacttggtcatgtaatggaagcaattaaatggggaactgattatctcatcaaagctcatactagcccaaatgtgttgtgggcaga 369  Q
    |||  |  ||||||||| |    ||   |||||||||||| |||||||| ||||||||| ||||||||||||| ||||| |||||||| |||||||||||    
T  37041028 ttgaaggtgctggtgaattacaacacacaatggaagcaatcaaatggggcactgattatttcatcaaagctcacactagtccaaatgttttgtgggcaga 37041127  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 21814295 - 21814333
Alignment:
Q  411 cagtgtaattatatgtgttggtgtcctgtcggtgtcgga 449  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  21814295 cagtgtaattatatgtgtcggtgtcgtgtcggtgtcgga 21814333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 500
Target Start/End: Original strand, 31084392 - 31084434
Alignment:
Q  458 cgacacctgttcgacactgggacatgcctaatgcgaggagtgt 500  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||    
T  31084392 cgacacgtgtccgacactgggacatgcctaatccgaggagtgt 31084434  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 3966534 - 3966575
Alignment:
Q  408 attcagtgtaattatatgtgttggtgtcctgtcggtgtcgga 449  Q
    ||||||||||||||||||||| |||||| |||| ||||||||    
T  3966534 attcagtgtaattatatgtgtcggtgtcgtgtcagtgtcgga 3966575  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 453
Target Start/End: Complemental strand, 32766971 - 32766926
Alignment:
Q  408 attcagtgtaattatatgtgttggtgtcctgtcggtgtcggaaacg 453  Q
    ||||| |||||||||||||||| ||||| ||||||||||| |||||    
T  32766971 attcaatgtaattatatgtgtttgtgtcgtgtcggtgtcgaaaacg 32766926  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 37328872 - 37328831
Alignment:
Q  408 attcagtgtaattatatgtgttggtgtcctgtcggtgtcgga 449  Q
    |||||||||||||| |||||| |||||| |||||||||||||    
T  37328872 attcagtgtaattacatgtgtcggtgtcgtgtcggtgtcgga 37328831  T

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Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 41915313 - 41915480
Alignment:
Q  176 tactatgatgcaggtgatcatgtgaaatttggtttaccaatggcatttactgtcacaatgttgtcatggagtgctattgagtttaggcaagaaattg-tt 274  Q
    |||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||||  |||||| | | |  || |||| | |     
T  41915313 tactatgatgcaggggataatgtgaaatttgggttaccaatggcatttactgttacaatgatgtcatggagtattattgaatatggtaaacaaatggcta 41915412  T
Q  275 gaagctggtgaacttggtcatgtaatggaagcaattaaatggggaactgattatctcatcaaagctcat 343  Q
    | || |||||||||||||||||  ||||||||  | |||||||| ||||||||| ||||||||||||||    
T  41915413 gtag-tggtgaacttggtcatgccatggaagctgtgaaatggggtactgattatttcatcaaagctcat 41915480  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 446
Target Start/End: Original strand, 29447479 - 29447513
Alignment:
Q  412 agtgtaattatatgtgttggtgtcctgtcggtgtc 446  Q
    |||||||||||||||||||||||| ||||||||||    
T  29447479 agtgtaattatatgtgttggtgtcgtgtcggtgtc 29447513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 14634169 - 14634128
Alignment:
Q  408 attcagtgtaattatatgtgttggtgtcctgtcggtgtcgga 449  Q
    ||||||||||||||||| |||||||||| ||||| |||||||    
T  14634169 attcagtgtaattatatttgttggtgtcgtgtcgatgtcgga 14634128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 28582482 - 28582391
Alignment:
Q  170 ggagggtactatgatgcaggtgatcatgtgaaatttggtttaccaatggcatttactgtcacaatgttgtcatggagtgctattgagtttag 261  Q
    |||||||||||||||||||||||||||||||| |||||  |||||||||| |  | |||||||||| |  ||||| | ||||||||||||||    
T  28582482 ggagggtactatgatgcaggtgatcatgtgaagtttgggctaccaatggcttacagtgtcacaatgcttgcatggggggctattgagtttag 28582391  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 504
Target Start/End: Original strand, 29205532 - 29205578
Alignment:
Q  458 cgacacctgttcgacactgggacatgcctaatgcgaggagtgttcgt 504  Q
    |||||| ||| ||||||||||||| ||||||| ||||||||||||||    
T  29205532 cgacacatgtccgacactgggacacgcctaatccgaggagtgttcgt 29205578  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 19500882 - 19500845
Alignment:
Q  412 agtgtaattatatgtgttggtgtcctgtcggtgtcgga 449  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  19500882 agtgtaattatatgtgatggtgtcgtgtcggtgtcgga 19500845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 35056899 - 35056940
Alignment:
Q  408 attcagtgtaattatatgtgttggtgtcctgtcggtgtcgga 449  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  35056899 attcagtgtaattatatgtgtcggtgtcgtgtcggtgtcgga 35056940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 18054828 - 18054792
Alignment:
Q  411 cagtgtaattatatgtgttggtgtcctgtcggtgtcg 447  Q
    ||||||||||||||||||||||||| |||||||||||    
T  18054828 cagtgtaattatatgtgttggtgtcgtgtcggtgtcg 18054792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 44482261 - 44482302
Alignment:
Q  408 attcagtgtaattatatgtgttggtgtcctgtcggtgtcgga 449  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  44482261 attcagtgtaattatatgtgtcggtgtcgtgtcggtgtcgga 44482302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 39419630 - 39419538
Alignment:
Q  167 gttggagggtactatgatgcaggtgatcatgtgaaatttggtttaccaatggcatttactgtcacaatgttgtcatggagtgctattgagttt 259  Q
    ||||||||||| |||||||| |||||  |||| || |||||||| || ||||| ||||||  ||| ||| | |||||||||| ||||||||||    
T  39419630 gttggagggtattatgatgctggtgacaatgtcaagtttggttttcctatggcttttactaccactatgctttcatggagtgttattgagttt 39419538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 443
Target Start/End: Original strand, 38503352 - 38503386
Alignment:
Q  409 ttcagtgtaattatatgtgttggtgtcctgtcggt 443  Q
    |||||||||||||||||||| ||||||||||||||    
T  38503352 ttcagtgtaattatatgtgtcggtgtcctgtcggt 38503386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 25361917 - 25361958
Alignment:
Q  408 attcagtgtaattatatgtgttggtgtcctgtcggtgtcgga 449  Q
    |||||||||||||||||||||  ||||| |||||||||||||    
T  25361917 attcagtgtaattatatgtgtcagtgtcgtgtcggtgtcgga 25361958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 34371744 - 34371785
Alignment:
Q  408 attcagtgtaattatatgtgttggtgtcctgtcggtgtcgga 449  Q
    ||||||||||||||||||||| |||||| ||| |||||||||    
T  34371744 attcagtgtaattatatgtgtcggtgtcgtgttggtgtcgga 34371785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 440
Target Start/End: Complemental strand, 31512008 - 31511976
Alignment:
Q  408 attcagtgtaattatatgtgttggtgtcctgtc 440  Q
    ||||| |||||||||||||||||||||||||||    
T  31512008 attcaatgtaattatatgtgttggtgtcctgtc 31511976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 442
Target Start/End: Original strand, 17307924 - 17307958
Alignment:
Q  408 attcagtgtaattatatgtgttggtgtcctgtcgg 442  Q
    |||||||||||||||||||||||||||| ||||||    
T  17307924 attcagtgtaattatatgtgttggtgtcgtgtcgg 17307958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 449
Target Start/End: Complemental strand, 16488615 - 16488577
Alignment:
Q  411 cagtgtaattatatgtgttggtgtcctgtcggtgtcgga 449  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  16488615 cagtgtaattatatgtgtcggtgtcgtgtcggtgtcgga 16488577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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